Chlorine in PDB 2i6f: Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs
Protein crystallography data
The structure of Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs, PDB code: 2i6f
was solved by
N.Echols,
J.Fraser,
J.Merlie,
D.Zusman,
T.Alber,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
1.90
|
Space group
|
I 4
|
Cell size a, b, c (Å), α, β, γ (°)
|
142.479,
142.479,
37.420,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22 /
25.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs
(pdb code 2i6f). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs, PDB code: 2i6f:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 2i6f
Go back to
Chlorine Binding Sites List in 2i6f
Chlorine binding site 1 out
of 4 in the Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:17.5
occ:1.00
|
O
|
A:HOH360
|
3.1
|
22.8
|
1.0
|
NZ
|
A:LYS105
|
3.2
|
20.4
|
1.0
|
N
|
A:ASP55
|
3.3
|
19.2
|
1.0
|
CE
|
A:LYS105
|
3.5
|
20.9
|
1.0
|
O
|
A:HOH346
|
3.6
|
19.7
|
1.0
|
CA
|
A:GLY84
|
3.6
|
20.9
|
1.0
|
CB
|
A:ASP55
|
3.7
|
19.7
|
1.0
|
N
|
A:VAL54
|
3.7
|
18.8
|
1.0
|
CD
|
A:LYS105
|
3.8
|
20.7
|
1.0
|
O
|
A:ILE83
|
4.0
|
20.4
|
1.0
|
CA
|
A:ASP55
|
4.0
|
19.5
|
1.0
|
CB
|
A:VAL54
|
4.1
|
18.7
|
1.0
|
C
|
A:VAL54
|
4.2
|
19.0
|
1.0
|
CA
|
A:VAL54
|
4.2
|
18.9
|
1.0
|
O
|
A:ASP55
|
4.3
|
19.5
|
1.0
|
CB
|
A:ALA53
|
4.3
|
18.7
|
1.0
|
N
|
A:GLY84
|
4.6
|
20.6
|
1.0
|
C
|
A:ASP55
|
4.6
|
19.2
|
1.0
|
C
|
A:ALA53
|
4.6
|
18.6
|
1.0
|
C
|
A:ILE83
|
4.6
|
20.4
|
1.0
|
N
|
A:ASN85
|
4.6
|
21.6
|
1.0
|
C
|
A:GLY84
|
4.7
|
21.1
|
1.0
|
CA
|
A:ALA53
|
4.8
|
18.7
|
1.0
|
O
|
A:HOH306
|
4.8
|
30.8
|
1.0
|
CG
|
A:LYS105
|
4.9
|
20.7
|
1.0
|
CG2
|
A:VAL54
|
5.0
|
18.8
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 2i6f
Go back to
Chlorine Binding Sites List in 2i6f
Chlorine binding site 2 out
of 4 in the Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:37.1
occ:1.00
|
O
|
A:HOH368
|
3.0
|
26.2
|
1.0
|
O
|
B:HOH392
|
3.1
|
25.1
|
1.0
|
CA
|
B:LEU14
|
3.8
|
20.7
|
1.0
|
N
|
B:LEU14
|
3.8
|
20.6
|
1.0
|
CB
|
A:ALA90
|
3.8
|
20.4
|
1.0
|
CB
|
B:LEU14
|
4.1
|
20.6
|
1.0
|
CG
|
A:GLN91
|
4.2
|
20.2
|
1.0
|
C
|
B:ALA13
|
4.2
|
20.4
|
1.0
|
OG1
|
B:THR17
|
4.3
|
23.5
|
1.0
|
CD1
|
B:LEU14
|
4.3
|
21.0
|
1.0
|
O
|
B:ALA13
|
4.4
|
20.2
|
1.0
|
CB
|
B:ALA13
|
4.5
|
20.4
|
1.0
|
O
|
A:HOH333
|
4.5
|
30.8
|
1.0
|
NE2
|
A:GLN91
|
4.5
|
19.7
|
1.0
|
N
|
A:GLN91
|
4.7
|
20.5
|
1.0
|
CD
|
A:GLN91
|
4.7
|
20.2
|
1.0
|
O
|
A:ASP87
|
4.8
|
21.6
|
1.0
|
CG
|
B:LEU14
|
4.8
|
20.8
|
1.0
|
O
|
A:HOH413
|
5.0
|
33.4
|
1.0
|
CA
|
A:ALA90
|
5.0
|
20.5
|
1.0
|
CB
|
B:THR17
|
5.0
|
23.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 2i6f
Go back to
Chlorine Binding Sites List in 2i6f
Chlorine binding site 3 out
of 4 in the Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:21.4
occ:1.00
|
O
|
A:HOH305
|
3.1
|
35.6
|
1.0
|
N
|
B:ASP55
|
3.1
|
18.9
|
0.0
|
N
|
B:ASP55
|
3.2
|
22.2
|
0.5
|
NZ
|
B:LYS105
|
3.2
|
24.8
|
1.0
|
O
|
B:HOH323
|
3.3
|
26.5
|
1.0
|
CA
|
B:GLY84
|
3.6
|
23.3
|
1.0
|
N
|
B:VAL54
|
3.7
|
21.8
|
1.0
|
O
|
B:HOH326
|
3.7
|
22.5
|
1.0
|
CE
|
B:LYS105
|
3.7
|
24.9
|
1.0
|
CB
|
B:ASP55
|
3.7
|
22.6
|
0.5
|
CA
|
B:ASP55
|
3.9
|
35.0
|
0.5
|
CB
|
B:ASP55
|
3.9
|
35.0
|
0.5
|
CD
|
B:LYS105
|
3.9
|
24.9
|
1.0
|
CA
|
B:ASP55
|
3.9
|
22.5
|
0.5
|
O
|
B:ILE83
|
4.0
|
23.0
|
1.0
|
CB
|
B:VAL54
|
4.0
|
21.9
|
1.0
|
CG
|
B:ASP55
|
4.1
|
22.8
|
0.5
|
CA
|
B:VAL54
|
4.1
|
22.0
|
1.0
|
C
|
B:VAL54
|
4.1
|
22.0
|
1.0
|
O
|
B:ASP55
|
4.2
|
22.6
|
0.5
|
O
|
B:ASP55
|
4.3
|
18.9
|
0.0
|
OD2
|
B:ASP55
|
4.3
|
23.4
|
0.5
|
CB
|
B:ALA53
|
4.4
|
21.8
|
1.0
|
N
|
B:ASN85
|
4.4
|
23.9
|
1.0
|
C
|
B:ASP55
|
4.5
|
22.7
|
0.5
|
C
|
B:ASP55
|
4.5
|
19.8
|
0.0
|
C
|
B:ALA53
|
4.6
|
21.7
|
1.0
|
N
|
B:GLY84
|
4.6
|
23.1
|
1.0
|
C
|
B:GLY84
|
4.6
|
23.5
|
1.0
|
C
|
B:ILE83
|
4.7
|
23.0
|
1.0
|
O
|
B:HOH367
|
4.7
|
27.4
|
1.0
|
CA
|
B:ALA53
|
4.7
|
21.7
|
1.0
|
OD1
|
B:ASP55
|
4.8
|
23.0
|
0.5
|
CG2
|
B:VAL54
|
4.9
|
22.1
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 2i6f
Go back to
Chlorine Binding Sites List in 2i6f
Chlorine binding site 4 out
of 4 in the Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Receiver Domain From Myxococcus Xanthus Social Motility Protein Frzs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl303
b:36.7
occ:1.00
|
O
|
C:HOH333
|
3.1
|
34.9
|
1.0
|
NZ
|
C:LYS105
|
3.2
|
37.7
|
1.0
|
N
|
C:ASP55
|
3.3
|
34.9
|
0.5
|
CA
|
C:GLY84
|
3.5
|
32.6
|
1.0
|
CE
|
C:LYS105
|
3.6
|
37.8
|
1.0
|
N
|
C:VAL54
|
3.7
|
35.3
|
1.0
|
O
|
C:ILE83
|
3.8
|
32.9
|
1.0
|
CB
|
C:ASP55
|
3.9
|
34.9
|
0.5
|
CB
|
C:ASP55
|
3.9
|
34.9
|
0.5
|
OD2
|
C:ASP55
|
3.9
|
35.1
|
0.5
|
CD
|
C:LYS105
|
3.9
|
37.8
|
1.0
|
CB
|
C:VAL54
|
4.0
|
35.1
|
1.0
|
CG
|
C:ASP55
|
4.1
|
35.0
|
0.5
|
CA
|
C:ASP55
|
4.1
|
34.9
|
0.5
|
CA
|
C:ASP55
|
4.1
|
34.9
|
0.5
|
CA
|
C:VAL54
|
4.2
|
35.2
|
1.0
|
C
|
C:VAL54
|
4.2
|
35.0
|
1.0
|
N
|
C:GLY84
|
4.5
|
32.7
|
1.0
|
CB
|
C:ALA53
|
4.5
|
35.6
|
1.0
|
C
|
C:ILE83
|
4.5
|
33.0
|
1.0
|
N
|
C:ASN85
|
4.5
|
32.4
|
1.0
|
O
|
C:ASP55
|
4.5
|
34.8
|
0.5
|
C
|
C:GLY84
|
4.6
|
32.5
|
1.0
|
C
|
C:ALA53
|
4.6
|
35.5
|
1.0
|
C
|
C:ASP55
|
4.7
|
34.9
|
0.5
|
CG2
|
C:VAL54
|
4.8
|
35.1
|
1.0
|
CA
|
C:ALA53
|
4.8
|
35.6
|
1.0
|
OD1
|
C:ASP55
|
4.9
|
35.1
|
0.5
|
CG1
|
C:VAL54
|
5.0
|
35.1
|
1.0
|
|
Reference:
J.S.Fraser,
J.P.Merlie,
N.Echols,
S.R.Weisfield,
T.Mignot,
D.E.Wemmer,
D.R.Zusman,
T.Alber.
An Atypical Receiver Domain Controls the Dynamic Polar Localization of the Myxococcus Xanthus Social Motility Protein Frzs. Mol.Microbiol. V. 65 319 2007.
ISSN: ISSN 0950-382X
PubMed: 17573816
DOI: 10.1111/J.1365-2958.2007.05785.X
Page generated: Sat Jul 20 08:04:55 2024
|