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Chlorine in PDB 3akf: Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase

Enzymatic activity of Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase

All present enzymatic activity of Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase:
3.2.1.55;

Protein crystallography data

The structure of Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase, PDB code: 3akf was solved by Z.Fujimoto, H.Ichinose, S.Kaneko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.81 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.961, 91.481, 135.451, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 25.4

Other elements in 3akf:

The structure of Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase (pdb code 3akf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase, PDB code: 3akf:

Chlorine binding site 1 out of 1 in 3akf

Go back to Chlorine Binding Sites List in 3akf
Chlorine binding site 1 out of 1 in the Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Exo-1,5-Alpha-L-Arabinofuranosidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:31.5
occ:1.00
N A:THR348 3.2 29.2 1.0
NH2 A:ARG335 3.3 29.8 1.0
NH1 A:ARG335 3.4 29.1 1.0
N A:ASN349 3.5 29.4 1.0
CB A:THR348 3.8 29.7 1.0
CZ A:ARG335 3.8 30.6 1.0
CA A:THR348 3.9 29.8 1.0
OG1 A:THR348 4.0 31.3 1.0
C A:VAL347 4.1 29.0 1.0
CG1 A:VAL347 4.1 26.6 1.0
O A:HOH723 4.2 56.6 1.0
CA A:VAL347 4.2 28.1 1.0
C A:THR348 4.2 29.7 1.0
CB A:ASN349 4.4 29.6 1.0
CA A:ASN349 4.5 29.3 1.0
O A:ASN346 4.8 27.8 1.0
CB A:VAL347 4.8 27.6 1.0
CZ3 A:TRP337 5.0 30.2 1.0

Reference:

Z.Fujimoto, H.Ichinose, T.Maehara, M.Honda, M.Kitaoka, S.Kaneko. Crystal Structure of An Exo-1,5-{Alpha}-L-Arabinofuranosidase From Streptomyces Avermitilis Provides Insights Into the Mechanism of Substrate Discrimination Between Exo- and Endo-Type Enzymes in Glycoside Hydrolase Family 43. J.Biol.Chem. V. 285 34134 2010.
ISSN: ISSN 0021-9258
PubMed: 20739278
DOI: 10.1074/JBC.M110.164251
Page generated: Sat Dec 12 09:31:32 2020

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