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Chlorine in PDB 3q12: Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate.

Enzymatic activity of Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate.

All present enzymatic activity of Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate.:
6.3.2.1;

Protein crystallography data

The structure of Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate., PDB code: 3q12 was solved by J.Osipiuk, N.Maltseva, K.Kwon, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.69 / 1.58
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 44.730, 77.054, 98.757, 100.67, 95.33, 94.43
R / Rfree (%) 15 / 19.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate. (pdb code 3q12). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate., PDB code: 3q12:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3q12

Go back to Chlorine Binding Sites List in 3q12
Chlorine binding site 1 out of 2 in the Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl285

b:19.4
occ:1.00
NH2 A:ARG189 3.2 19.8 0.5
NE2 A:GLN61 3.3 12.6 1.0
NH2 A:ARG123 3.3 16.9 1.0
NH1 A:ARG123 3.4 15.5 1.0
NH2 A:ARG189 3.4 17.6 0.5
CE1 A:HIS126 3.4 15.7 1.0
O A:HOH704 3.6 25.1 1.0
NH1 A:ARG189 3.7 18.4 0.5
CZ A:ARG123 3.8 15.5 1.0
CE A:MET30 3.8 17.8 1.0
ND1 A:HIS126 3.9 14.2 1.0
CZ A:ARG189 3.9 19.1 0.5
CG A:GLN61 4.1 12.7 1.0
CD A:GLN61 4.2 12.5 1.0
O A:GLN61 4.4 15.1 1.0
CZ A:PHE62 4.4 18.6 1.0
NE2 A:HIS126 4.5 15.3 1.0
CZ A:ARG189 4.5 18.0 0.5
CE1 A:PHE62 4.6 18.5 1.0
CE2 A:PHE62 4.7 14.7 1.0
NE A:ARG189 4.8 17.6 0.5
CB A:GLN61 4.9 12.5 1.0
CD1 A:PHE62 4.9 15.3 1.0

Chlorine binding site 2 out of 2 in 3q12

Go back to Chlorine Binding Sites List in 3q12
Chlorine binding site 2 out of 2 in the Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Pantoate-Beta-Alanine Ligase From Yersinia Pestis in Complex with Pantoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl285

b:22.9
occ:1.00
O C:HOH1028 2.9 50.4 1.0
NH2 C:ARG123 3.3 20.2 1.0
OE1 C:GLN61 3.3 18.0 1.0
NH2 C:ARG189 3.3 29.7 1.0
NH1 C:ARG123 3.4 18.9 1.0
CE1 C:HIS126 3.5 18.2 1.0
O C:HOH798 3.6 32.8 1.0
CZ C:ARG123 3.8 20.0 1.0
CE C:MET30 3.9 18.3 1.0
ND1 C:HIS126 3.9 18.7 1.0
CD C:GLN61 4.1 14.6 1.0
CG C:GLN61 4.2 14.9 1.0
CZ C:PHE62 4.3 21.0 1.0
O C:GLN61 4.3 19.0 1.0
CZ C:ARG189 4.4 31.1 1.0
CE1 C:PHE62 4.4 20.2 1.0
NE2 C:HIS126 4.5 18.4 1.0
NE C:ARG189 4.6 31.4 1.0
CE2 C:PHE62 4.7 19.5 1.0
CD1 C:PHE62 4.7 19.4 1.0
SD C:MET30 5.0 17.9 1.0

Reference:

J.Osipiuk, N.Maltseva, K.Kwon, W.F.Anderson, A.Joachimiak. Pantoate-Beta-Alanine Ligase From Yersinia Pestis. To Be Published.
Page generated: Sat Dec 12 10:03:38 2020

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