Chlorine in PDB 3w96: Crystal Structure of Human Nucleosome Core Particle Lacking H2A N- Terminal Region

The structure of Crystal Structure of Human Nucleosome Core Particle Lacking H2A N- Terminal Region, PDB code: 3w96 was solved by W.Iwasaki, Y.Miya, N.Horikoshi, A.Osakabe, H.Tachiwana, T.Shibata, W.Kagawa, H.Kurumizaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.44 / 3.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	104.515, 109.319, 175.658, 90.00, 90.00, 90.00
R / Rfree (%)	24.7 / 29.6

The structure of Crystal Structure of Human Nucleosome Core Particle Lacking H2A N- Terminal Region also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Chlorine atom in the Crystal Structure of Human Nucleosome Core Particle Lacking H2A N- Terminal Region (pdb code 3w96). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Nucleosome Core Particle Lacking H2A N- Terminal Region, PDB code: 3w96:

Chlorine binding site 1 out of 1 in the Crystal Structure of Human Nucleosome Core Particle Lacking H2A N- Terminal Region


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Nucleosome Core Particle Lacking H2A N- Terminal Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1001 b:0.6 occ:1.00 N A:LYS122 3.2 87.7 1.0 CG A:LYS122 3.4 87.2 1.0 CD A:PRO121 3.7 85.8 1.0 CB A:PRO121 3.7 86.1 1.0 N A:PRO121 3.7 86.3 1.0 CB A:LYS122 3.8 86.0 1.0 C A:PRO121 4.0 89.3 1.0 CA A:PRO121 4.0 89.0 1.0 CA A:LYS122 4.0 85.7 1.0 CD A:LYS122 4.1 98.9 1.0 CB A:MET120 4.2 81.5 1.0 CG A:PRO121 4.2 83.7 1.0 CE A:LYS122 4.4 0.9 1.0 C A:MET120 4.5 84.4 1.0 CA A:MET120 5.0 82.6 1.0 SD A:MET120 5.0 96.8 1.0

W.Iwasaki, Y.Miya, N.Horikoshi, A.Osakabe, H.Taguchi, H.Tachiwana, T.Shibata, W.Kagawa, H.Kurumizaka. Contribution of Histone N-Terminal Tails to the Structure and Stability of Nucleosomes Febs Open Bio V. 3 363 2013.
ISSN: ESSN 2211-5463
PubMed: 24251097
DOI: 10.1016/J.FOB.2013.08.007