Atomistry » Chlorine » PDB 5i1f-5ibc » 5i1f
Atomistry »
  Chlorine »
    PDB 5i1f-5ibc »
      5i1f »

Chlorine in PDB 5i1f: Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose

Enzymatic activity of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose

All present enzymatic activity of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose:
2.7.7.9;

Protein crystallography data

The structure of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose, PDB code: 5i1f was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.15
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.900, 84.900, 252.700, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 20.3

Other elements in 5i1f:

The structure of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose (pdb code 5i1f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose, PDB code: 5i1f:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 1 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:50.1
occ:0.71
 N A:ALA166 3.4 61.6 1.0
CB A:ALA166 3.5 68.3 1.0
CD A:PRO165 3.6 53.6 1.0
CB A:ALA164 3.6 53.6 1.0
N A:PRO165 3.8 51.9 1.0
CA A:ALA166 4.0 64.8 1.0
C A:ALA164 4.2 50.1 1.0
C A:PRO165 4.3 58.6 1.0
CA A:ALA164 4.4 51.3 1.0
CA A:PRO165 4.4 53.9 1.0
CG A:PRO165 4.5 53.6 1.0
CB A:PRO165 4.5 56.1 1.0
O A:ALA164 4.8 48.2 1.0

Chlorine binding site 2 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 2 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:54.3
occ:0.82
 O A:HOH575 2.9 47.9 1.0
CD A:PRO126 3.7 39.6 1.0
CG A:LYS211 3.8 45.6 1.0
CG A:PRO126 3.8 45.1 1.0
CZ A:PHE150 3.9 44.7 1.0
CB A:PRO126 3.9 32.2 1.0
CD A:PRO212 4.1 33.1 1.0
CD1 A:LEU2 4.1 78.7 1.0
CE A:LYS211 4.3 52.1 1.0
N A:PRO126 4.3 42.7 1.0
CE1 A:PHE150 4.4 44.9 1.0
CB A:LYS211 4.5 36.0 1.0
CD A:LYS211 4.6 51.0 1.0
CA A:PRO126 4.6 39.0 1.0
CB A:LEU2 4.7 78.0 1.0
CA A:LYS211 4.8 33.1 1.0
CE2 A:PHE150 4.9 40.1 1.0
CG A:PRO212 5.0 35.0 1.0
CG A:LEU2 5.0 81.4 1.0

Chlorine binding site 3 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 3 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:41.9
occ:0.60
 O A:HOH575 2.7 47.9 1.0
O A:HOH401 2.8 54.8 1.0
O A:HOH561 3.0 59.9 1.0
N A:LYS213 3.3 39.3 1.0
CB A:LYS213 3.4 38.4 1.0
CD A:PRO212 3.5 33.1 1.0
CG A:PRO212 3.6 35.0 1.0
CB A:LYS211 3.7 36.0 1.0
N A:PRO212 3.8 31.6 1.0
CA A:LYS213 3.9 42.4 1.0
CE A:LYS211 4.2 52.1 1.0
C A:LYS211 4.2 33.0 1.0
C A:PRO212 4.2 39.1 1.0
CA A:PRO212 4.5 37.6 1.0
CG A:LYS211 4.5 45.6 1.0
CA A:LYS211 4.5 33.1 1.0
CG A:LYS213 4.6 49.5 1.0
CB A:PRO212 4.6 36.6 1.0
OE2 A:GLU242 4.7 56.5 1.0
OE1 A:GLU242 4.8 57.7 1.0
CD A:LYS211 4.8 51.0 1.0
O A:LYS211 4.8 31.0 1.0
CE A:LYS213 4.9 68.4 1.0

Chlorine binding site 4 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 4 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:38.5
occ:0.62
 O A:HOH547 3.0 47.7 1.0
N A:ASP255 3.1 38.9 1.0
CA A:PHE254 3.7 41.1 1.0
CA A:GLY261 3.8 38.9 1.0
C A:PHE254 3.9 44.2 1.0
O A:ARG253 4.1 45.7 1.0
CD A:LYS264 4.1 51.3 1.0
CA A:ASP255 4.1 44.7 1.0
CB A:ASP255 4.2 50.3 1.0
CD1 A:PHE254 4.3 42.2 1.0
CB A:PHE254 4.4 40.6 1.0
NZ A:LYS264 4.5 58.3 1.0
N A:PHE254 4.7 44.4 1.0
C A:ASP255 4.7 41.5 1.0
O A:ASP255 4.7 37.8 1.0
N A:GLY261 4.7 39.0 1.0
C A:ARG253 4.8 45.3 1.0
C A:GLY261 4.8 39.3 1.0
O A:HOH526 4.8 47.6 1.0
CG A:PHE254 4.8 45.2 1.0
O A:GLY261 4.9 41.3 1.0
CE A:LYS264 4.9 50.5 1.0

Chlorine binding site 5 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 5 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:34.8
occ:0.85
 O A:HOH488 3.0 40.2 1.0
NZ A:LYS27 3.3 26.3 1.0
O A:HOH469 3.4 38.6 1.0
CA A:GLY13 3.4 36.4 1.0
N A:GLY15 3.5 31.8 1.0
CE A:LYS27 3.6 33.3 1.0
C A:GLY13 3.7 34.9 1.0
N A:LEU14 3.8 36.7 1.0
CD A:LYS27 3.9 34.6 1.0
O A:HOH554 3.9 38.5 1.0
CA A:GLY15 4.0 30.9 1.0
C2C A:UPG301 4.0 28.9 1.0
O2C A:UPG301 4.1 29.8 1.0
O2A A:UPG301 4.2 27.2 1.0
N A:GLY13 4.3 32.6 1.0
CG A:LYS27 4.4 32.6 1.0
O A:HOH536 4.4 28.2 1.0
O A:GLY13 4.4 38.7 1.0
O A:HOH461 4.4 34.7 1.0
O A:HOH507 4.4 37.6 1.0
C A:LEU14 4.5 37.9 1.0
O A:HOH510 4.5 48.8 1.0
O5C A:UPG301 4.6 30.9 1.0
C6 A:UPG301 4.7 27.8 1.0
MG A:MG302 4.7 45.2 1.0
PA A:UPG301 4.7 29.3 1.0
O1A A:UPG301 4.7 22.1 1.0
CA A:LEU14 4.7 38.8 1.0
OE2 A:GLU28 4.8 30.9 1.0
O A:HOH424 4.8 36.7 1.0
C3C A:UPG301 4.9 31.7 1.0

Chlorine binding site 6 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 6 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl309

b:45.9
occ:0.86
 N A:LYS259 3.2 42.3 1.0
O A:HOH492 3.2 49.9 1.0
CD A:LYS259 3.4 61.1 1.0
CD A:ARG17 3.7 42.9 1.0
CA A:SER258 3.7 42.0 1.0
CB A:SER258 3.9 44.3 1.0
C A:SER258 3.9 41.0 1.0
CB A:LYS259 4.0 44.6 1.0
CG A:ARG17 4.0 39.1 1.0
CB A:ARG17 4.1 39.6 1.0
NE A:ARG17 4.2 47.4 1.0
CA A:LYS259 4.2 42.2 1.0
NZ A:LYS259 4.2 72.1 1.0
CE A:LYS259 4.2 60.4 1.0
CG A:LYS259 4.2 48.1 1.0
CZ A:ARG17 4.7 52.6 1.0
NH1 A:ARG17 4.9 42.2 1.0
N A:LEU260 4.9 41.9 1.0
O A:GLY257 4.9 36.9 1.0

Reference:

J.Abendroth, D.D.Lorimer, T.E.Edwards. Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate-Glucose To Be Published.
Page generated: Fri Jul 26 09:08:39 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy