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Chlorine in PDB 6a18: Crystal Structure of CYP90B1 in Complex with 1,6-Hexandiol

Protein crystallography data

The structure of Crystal Structure of CYP90B1 in Complex with 1,6-Hexandiol, PDB code: 6a18 was solved by K.Fujiyama, T.Hino, M.Kanadani, M.Mizutani, S.Nagano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.02 / 2.48
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 146.715, 146.715, 64.605, 90.00, 90.00, 120.00
R / Rfree (%) 18.3 / 21.6

Other elements in 6a18:

The structure of Crystal Structure of CYP90B1 in Complex with 1,6-Hexandiol also contains other interesting chemical elements:

Iron (Fe) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of CYP90B1 in Complex with 1,6-Hexandiol (pdb code 6a18). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of CYP90B1 in Complex with 1,6-Hexandiol, PDB code: 6a18:

Chlorine binding site 1 out of 1 in 6a18

Go back to Chlorine Binding Sites List in 6a18
Chlorine binding site 1 out of 1 in the Crystal Structure of CYP90B1 in Complex with 1,6-Hexandiol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of CYP90B1 in Complex with 1,6-Hexandiol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl604

b:64.5
occ:1.00
N A:ASP420 3.4 60.8 1.0
NE A:ARG429 3.4 60.5 1.0
NE2 A:GLN433 3.6 61.8 1.0
NH2 A:ARG429 3.6 64.0 1.0
CB A:ARG429 3.9 44.1 1.0
CZ A:ARG429 4.0 55.5 1.0
CA A:TYR419 4.0 50.5 1.0
CG A:GLN433 4.1 55.0 1.0
CD2 A:TYR419 4.1 47.8 1.0
CB A:ASP420 4.1 70.6 1.0
C A:TYR419 4.2 64.5 1.0
CG A:ARG429 4.3 42.7 1.0
CA A:ASP420 4.3 60.9 1.0
CD A:GLN433 4.3 65.5 1.0
CB A:TYR419 4.3 53.0 1.0
CD A:ARG429 4.4 48.6 1.0
O A:ASP420 4.4 62.4 1.0
CG A:TYR419 4.7 53.6 1.0
C A:ASP420 4.9 62.0 1.0
CA A:ARG429 4.9 46.2 1.0

Reference:

K.Fujiyama, T.Hino, M.Kanadani, B.Watanabe, H.Jae Lee, M.Mizutani, S.Nagano. Structural Insights Into A Key Step of Brassinosteroid Biosynthesis and Its Inhibition. Nat.Plants V. 5 589 2019.
ISSN: ESSN 2055-0278
PubMed: 31182839
DOI: 10.1038/S41477-019-0436-6
Page generated: Fri Jul 26 21:53:07 2024

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