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Chlorine in PDB 6cua: Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese

Enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese

All present enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese:
2.7.7.7;

Protein crystallography data

The structure of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese, PDB code: 6cua was solved by M.-C.Koag, S.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.91 / 2.17
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.713, 79.620, 55.262, 90.00, 108.78, 90.00
R / Rfree (%) 20.9 / 25.9

Other elements in 6cua:

The structure of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese (pdb code 6cua). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese, PDB code: 6cua:

Chlorine binding site 1 out of 1 in 6cua

Go back to Chlorine Binding Sites List in 6cua
Chlorine binding site 1 out of 1 in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Cl6

b:39.0
occ:1.00
 CL T:F746 0.0 39.0 1.0
C8 T:F746 1.7 35.7 1.0
N9 T:F746 2.7 35.1 1.0
N7 T:F746 2.7 33.7 1.0
O4' T:DT7 3.1 32.2 1.0
C1' T:F746 3.1 35.5 1.0
CZ A:ARG283 3.5 39.1 1.0
NH2 A:ARG283 3.6 37.4 1.0
NE A:ARG283 3.7 38.0 1.0
C4 T:F746 3.8 35.0 1.0
C5 T:F746 3.8 33.9 1.0
C4' T:DT7 3.8 35.5 1.0
C1' T:DT7 3.9 33.1 1.0
NH1 A:ARG283 4.0 34.9 1.0
O4' T:F746 4.1 31.6 1.0
C5' T:DT7 4.2 35.5 1.0
C2' T:F746 4.3 36.8 1.0
N1 T:DT7 4.3 33.4 1.0
OH A:TYR271 4.4 41.3 1.0
CD A:ARG283 4.4 33.1 1.0
O2 T:DT7 4.6 32.5 1.0
C2 T:DT7 4.6 34.7 1.0
O A:HOH578 4.7 39.3 1.0
N2 A:XG4405 4.8 39.9 1.0
C6 T:DT7 5.0 32.2 1.0

Reference:

M.-C.Koag, S.Lee. Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese To Be Published.
Page generated: Sat Jul 27 21:12:37 2024

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