Chlorine in PDB 6e77: Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis
Protein crystallography data
The structure of Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis, PDB code: 6e77
was solved by
L.Saelices,
K.Chung,
M.R.Sawaya,
D.Cascio,
D.Eisenberg,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.62 /
1.60
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.460,
85.070,
64.510,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.3 /
20.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis
(pdb code 6e77). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis, PDB code: 6e77:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6e77
Go back to
Chlorine Binding Sites List in 6e77
Chlorine binding site 1 out
of 4 in the Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:16.8
occ:0.46
|
CLC
|
A:3MI201
|
0.0
|
16.8
|
0.5
|
CAN
|
A:3MI201
|
1.8
|
13.8
|
0.5
|
CAH
|
A:3MI201
|
2.7
|
16.5
|
0.5
|
CAG
|
A:3MI201
|
2.7
|
14.2
|
0.5
|
O
|
A:SER117
|
3.5
|
15.8
|
1.0
|
C
|
A:SER117
|
3.6
|
16.7
|
1.0
|
CA
|
A:THR118
|
3.7
|
13.8
|
1.0
|
N
|
A:THR118
|
3.8
|
14.3
|
1.0
|
N
|
A:THR119
|
3.8
|
14.8
|
1.0
|
C
|
A:THR118
|
3.8
|
17.2
|
1.0
|
CB
|
A:SER117
|
3.9
|
19.6
|
1.0
|
CAQ
|
A:3MI201
|
4.0
|
16.5
|
0.5
|
O
|
A:ALA108
|
4.0
|
18.7
|
1.0
|
CAO
|
A:3MI201
|
4.0
|
16.7
|
0.5
|
N
|
A:LEU110
|
4.0
|
14.6
|
1.0
|
CG2
|
A:THR119
|
4.1
|
20.2
|
1.0
|
CB
|
A:LEU110
|
4.1
|
15.6
|
1.0
|
CA
|
A:ALA109
|
4.3
|
15.3
|
1.0
|
CB
|
A:THR119
|
4.3
|
17.7
|
1.0
|
C
|
A:ALA108
|
4.4
|
19.3
|
1.0
|
C
|
A:ALA109
|
4.4
|
18.6
|
1.0
|
CA
|
A:SER117
|
4.4
|
14.7
|
1.0
|
O
|
A:THR118
|
4.5
|
17.8
|
1.0
|
CAI
|
A:3MI201
|
4.5
|
15.5
|
0.5
|
N
|
A:ALA109
|
4.6
|
15.3
|
1.0
|
CA
|
A:THR119
|
4.7
|
14.7
|
1.0
|
CA
|
A:LEU110
|
4.7
|
15.1
|
1.0
|
CB
|
A:ALA108
|
4.8
|
18.3
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6e77
Go back to
Chlorine Binding Sites List in 6e77
Chlorine binding site 2 out
of 4 in the Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:18.6
occ:0.46
|
CLD
|
A:3MI201
|
0.0
|
18.6
|
0.5
|
CAO
|
A:3MI201
|
1.8
|
16.7
|
0.5
|
CAG
|
A:3MI201
|
2.7
|
14.2
|
0.5
|
CAI
|
A:3MI201
|
2.7
|
15.5
|
0.5
|
CD2
|
A:LEU110
|
3.6
|
19.2
|
1.0
|
CAN
|
A:3MI201
|
4.0
|
13.8
|
0.5
|
CAQ
|
A:3MI201
|
4.0
|
16.5
|
0.5
|
CAH
|
A:3MI201
|
4.5
|
16.5
|
0.5
|
CG
|
A:LEU110
|
5.0
|
18.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6e77
Go back to
Chlorine Binding Sites List in 6e77
Chlorine binding site 3 out
of 4 in the Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl201
b:17.4
occ:0.43
|
CLC
|
B:3MI201
|
0.0
|
17.4
|
0.4
|
CAN
|
B:3MI201
|
1.8
|
17.8
|
0.4
|
CAG
|
B:3MI201
|
2.7
|
16.9
|
0.4
|
CAH
|
B:3MI201
|
2.7
|
15.5
|
0.4
|
CB
|
B:SER117
|
3.5
|
18.4
|
1.0
|
C
|
B:SER117
|
3.6
|
17.2
|
1.0
|
N
|
B:THR118
|
3.6
|
14.8
|
1.0
|
O
|
B:SER117
|
3.6
|
17.0
|
1.0
|
C
|
B:THR118
|
3.6
|
18.8
|
1.0
|
CA
|
B:THR118
|
3.7
|
14.3
|
1.0
|
N
|
B:THR119
|
3.8
|
15.8
|
1.0
|
CAO
|
B:3MI201
|
4.0
|
16.4
|
0.4
|
CAQ
|
B:3MI201
|
4.0
|
16.1
|
0.4
|
CG2
|
B:THR119
|
4.1
|
19.1
|
1.0
|
O
|
B:THR118
|
4.1
|
18.2
|
1.0
|
CB
|
B:THR119
|
4.1
|
17.8
|
1.0
|
CA
|
B:SER117
|
4.2
|
15.1
|
1.0
|
O
|
B:ALA108
|
4.4
|
17.7
|
1.0
|
CB
|
B:LEU110
|
4.4
|
15.8
|
1.0
|
N
|
B:LEU110
|
4.5
|
13.8
|
1.0
|
CAI
|
B:3MI201
|
4.5
|
15.9
|
0.4
|
CA
|
B:THR119
|
4.6
|
15.9
|
1.0
|
OG
|
B:SER117
|
4.7
|
26.7
|
1.0
|
OG
|
A:SER115
|
4.7
|
17.7
|
0.6
|
CA
|
B:ALA109
|
4.9
|
15.7
|
1.0
|
C
|
B:ALA108
|
4.9
|
18.8
|
1.0
|
C
|
B:ALA109
|
5.0
|
18.5
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6e77
Go back to
Chlorine Binding Sites List in 6e77
Chlorine binding site 4 out
of 4 in the Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of Human Transthyretin ASP38ALA Mutant in Complex with Tafamidis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl201
b:16.8
occ:0.43
|
CLD
|
B:3MI201
|
0.0
|
16.8
|
0.4
|
CAO
|
B:3MI201
|
1.8
|
16.4
|
0.4
|
CAI
|
B:3MI201
|
2.7
|
15.9
|
0.4
|
CAG
|
B:3MI201
|
2.7
|
16.9
|
0.4
|
CAQ
|
B:3MI201
|
3.9
|
16.1
|
0.4
|
CAN
|
B:3MI201
|
4.0
|
17.8
|
0.4
|
CD2
|
B:LEU110
|
4.3
|
19.9
|
1.0
|
CAH
|
B:3MI201
|
4.5
|
15.5
|
0.4
|
|
Reference:
L.Saelices,
K.Chung,
S.Esswein,
J.Chou,
W.Liang,
J.H.Li,
M.R.Sawaya,
D.Cascio,
D.Eisenberg.
Structural Variants of Transthyretin To Be Published.
Page generated: Sat Jul 27 22:13:38 2024
|