Chlorine in PDB 6jkz: Crystal Structure of Vvplpa From Vibrio Vulnificus

The structure of Crystal Structure of Vvplpa From Vibrio Vulnificus, PDB code: 6jkz was solved by Q.Ma, Y.Wan, C.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.98 / 1.40
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	54.158, 54.158, 233.143, 90.00, 90.00, 120.00
R / Rfree (%)	16.6 / 18.7

The binding sites of Chlorine atom in the Crystal Structure of Vvplpa From Vibrio Vulnificus (pdb code 6jkz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Vvplpa From Vibrio Vulnificus, PDB code: 6jkz:

Chlorine binding site 1 out of 1 in the Crystal Structure of Vvplpa From Vibrio Vulnificus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Vvplpa From Vibrio Vulnificus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl501 b:22.2 occ:1.00 O A:HOH810 3.2 22.8 1.0 N A:HIS392 3.3 20.5 1.0 ND1 A:HIS392 3.3 20.7 1.0 N A:GLY389 3.4 21.9 1.0 CA A:GLY389 3.4 21.7 1.0 NE1 A:TRP173 3.4 20.3 1.0 CB A:HIS392 3.6 21.3 1.0 N A:THR391 3.8 23.1 1.0 C A:GLY389 3.8 21.6 1.0 CG A:HIS392 3.9 20.7 1.0 N A:VAL390 4.0 23.8 1.0 CA A:HIS392 4.0 21.6 1.0 OH A:TYR367 4.0 26.7 1.0 CE1 A:TYR367 4.1 21.9 1.0 CB A:THR391 4.2 27.0 1.0 C A:THR391 4.2 21.5 1.0 CE2 A:TRP173 4.2 19.1 1.0 CA A:THR391 4.3 23.5 1.0 CZ2 A:TRP173 4.4 19.3 1.0 O A:HIS392 4.4 20.3 1.0 CD1 A:TRP173 4.4 19.4 1.0 CE1 A:HIS392 4.5 24.2 1.0 CZ A:TYR367 4.5 22.4 1.0 O A:GLY389 4.5 22.9 1.0 C A:TRP388 4.6 23.0 1.0 CD1 A:TRP388 4.7 18.0 1.0 C A:HIS392 4.7 20.0 1.0 CB A:TRP388 4.8 18.5 1.0 C A:VAL390 4.8 24.4 1.0

Y.Wan, C.Liu, Q.Ma. Structural Analysis of Avibriophospholipase Reveals An Unusual Ser-His-Chloride Catalytic Triad. J.Biol.Chem. V. 294 11391 2019.
ISSN: ESSN 1083-351X
PubMed: 31073025
DOI: 10.1074/JBC.RA119.008280