Chlorine in PDB 6lzr: Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.
Protein crystallography data
The structure of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose., PDB code: 6lzr
was solved by
Y.Kitaoku,
P.Ubonbal,
L.T.Tran,
R.C.Robinson,
W.Suginta,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.30 /
1.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
61.879,
57.108,
164.259,
90,
99.53,
90
|
R / Rfree (%)
|
23.8 /
27.1
|
Other elements in 6lzr:
The structure of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.
(pdb code 6lzr). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose., PDB code: 6lzr:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 6lzr
Go back to
Chlorine Binding Sites List in 6lzr
Chlorine binding site 1 out
of 5 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl622
b:12.1
occ:1.00
|
OG
|
A:SER298
|
3.1
|
11.6
|
1.0
|
NE2
|
A:GLN471
|
3.2
|
19.7
|
1.0
|
O
|
A:HOH925
|
3.2
|
18.0
|
1.0
|
N
|
A:SER298
|
3.4
|
9.3
|
1.0
|
N
|
A:ALA297
|
3.5
|
10.8
|
1.0
|
CB
|
A:SER298
|
3.6
|
12.9
|
1.0
|
CG
|
A:GLN471
|
3.8
|
11.8
|
1.0
|
CA
|
A:HIS313
|
3.8
|
16.1
|
1.0
|
CB
|
A:PHE296
|
3.8
|
12.8
|
1.0
|
CD2
|
A:PHE296
|
3.8
|
10.6
|
1.0
|
CA
|
A:PHE296
|
3.9
|
12.3
|
1.0
|
CD
|
A:GLN471
|
4.0
|
15.8
|
1.0
|
CB
|
A:ALA475
|
4.0
|
14.0
|
1.0
|
C
|
A:PHE296
|
4.0
|
13.0
|
1.0
|
N
|
A:HIS313
|
4.1
|
15.4
|
1.0
|
CA
|
A:SER298
|
4.1
|
10.8
|
1.0
|
CG2
|
A:THR312
|
4.2
|
17.0
|
1.0
|
CG
|
A:PHE296
|
4.3
|
10.1
|
1.0
|
CB
|
A:HIS313
|
4.3
|
15.8
|
1.0
|
CA
|
A:ALA297
|
4.3
|
11.0
|
1.0
|
C
|
A:ALA297
|
4.4
|
13.7
|
1.0
|
C
|
A:THR312
|
4.5
|
19.5
|
1.0
|
CD2
|
A:HIS313
|
4.5
|
17.7
|
1.0
|
CB
|
A:ALA297
|
4.5
|
11.9
|
1.0
|
O
|
A:THR312
|
4.5
|
18.1
|
1.0
|
CG
|
A:HIS313
|
4.7
|
16.5
|
1.0
|
O
|
A:GLN471
|
4.8
|
13.0
|
1.0
|
O
|
A:PHE296
|
4.9
|
11.9
|
1.0
|
CE2
|
A:PHE296
|
4.9
|
10.8
|
1.0
|
C
|
A:HIS313
|
5.0
|
17.9
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 6lzr
Go back to
Chlorine Binding Sites List in 6lzr
Chlorine binding site 2 out
of 5 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl623
b:40.0
occ:1.00
|
N
|
A:GLU158
|
3.2
|
19.9
|
1.0
|
O
|
A:HOH858
|
3.6
|
25.8
|
1.0
|
CB
|
A:GLU158
|
3.7
|
24.0
|
1.0
|
CG
|
A:GLU158
|
3.8
|
30.2
|
1.0
|
CE1
|
A:PHE155
|
3.8
|
25.6
|
1.0
|
N
|
A:ASN157
|
4.0
|
21.4
|
1.0
|
CA
|
A:GLU158
|
4.0
|
20.5
|
1.0
|
CA
|
A:ASN157
|
4.1
|
19.2
|
1.0
|
C
|
A:ASN157
|
4.1
|
19.7
|
1.0
|
OG1
|
A:THR156
|
4.2
|
23.6
|
1.0
|
N
|
A:ASN159
|
4.4
|
22.6
|
1.0
|
CZ
|
A:PHE155
|
4.4
|
24.7
|
1.0
|
CD1
|
A:PHE155
|
4.6
|
22.5
|
1.0
|
C
|
A:GLU158
|
4.7
|
15.6
|
1.0
|
CD
|
A:GLU158
|
4.7
|
39.8
|
1.0
|
OD1
|
A:ASN159
|
4.8
|
31.3
|
1.0
|
C
|
A:THR156
|
4.8
|
20.3
|
1.0
|
OE1
|
A:GLU158
|
5.0
|
43.4
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 6lzr
Go back to
Chlorine Binding Sites List in 6lzr
Chlorine binding site 3 out
of 5 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl624
b:36.9
occ:1.00
|
O
|
A:HOH706
|
2.5
|
32.0
|
1.0
|
O
|
A:HOH1048
|
2.8
|
41.6
|
1.0
|
CB
|
A:ALA306
|
3.5
|
27.5
|
1.0
|
N
|
A:ALA306
|
3.9
|
21.5
|
1.0
|
CD1
|
A:TRP307
|
4.0
|
14.5
|
1.0
|
O
|
A:ALA303
|
4.2
|
19.4
|
1.0
|
N
|
A:GLU305
|
4.3
|
21.4
|
1.0
|
CA
|
A:ALA306
|
4.3
|
24.1
|
1.0
|
NE1
|
A:TRP307
|
4.3
|
15.3
|
1.0
|
CA
|
A:PHE304
|
4.3
|
15.0
|
1.0
|
C
|
A:PHE304
|
4.5
|
22.7
|
1.0
|
O
|
A:HOH853
|
4.5
|
22.4
|
1.0
|
CD1
|
A:PHE304
|
4.8
|
13.6
|
1.0
|
C
|
A:GLU305
|
5.0
|
19.5
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 6lzr
Go back to
Chlorine Binding Sites List in 6lzr
Chlorine binding site 4 out
of 5 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl615
b:12.3
occ:1.00
|
OG
|
B:SER298
|
2.9
|
10.3
|
1.0
|
NE2
|
B:GLN471
|
3.3
|
14.6
|
1.0
|
CB
|
B:SER298
|
3.3
|
12.9
|
1.0
|
N
|
B:SER298
|
3.4
|
10.8
|
1.0
|
O
|
B:HOH930
|
3.4
|
18.5
|
1.0
|
N
|
B:ALA297
|
3.7
|
11.1
|
1.0
|
CD2
|
B:PHE296
|
3.8
|
13.5
|
1.0
|
CG
|
B:GLN471
|
3.8
|
12.0
|
1.0
|
CB
|
B:PHE296
|
3.8
|
12.3
|
1.0
|
CA
|
B:HIS313
|
3.9
|
12.7
|
1.0
|
CA
|
B:SER298
|
4.0
|
8.0
|
1.0
|
CB
|
B:ALA475
|
4.0
|
14.1
|
1.0
|
CA
|
B:PHE296
|
4.0
|
9.7
|
1.0
|
CD
|
B:GLN471
|
4.0
|
18.3
|
1.0
|
C
|
B:PHE296
|
4.1
|
12.3
|
1.0
|
CG2
|
B:THR312
|
4.2
|
17.5
|
1.0
|
N
|
B:HIS313
|
4.3
|
14.1
|
1.0
|
CG
|
B:PHE296
|
4.3
|
11.0
|
1.0
|
C
|
B:ALA297
|
4.4
|
9.5
|
1.0
|
CA
|
B:ALA297
|
4.4
|
12.0
|
1.0
|
CB
|
B:HIS313
|
4.5
|
15.2
|
1.0
|
O
|
B:THR312
|
4.5
|
16.1
|
1.0
|
C
|
B:THR312
|
4.5
|
16.6
|
1.0
|
CD2
|
B:HIS313
|
4.6
|
17.8
|
1.0
|
CB
|
B:ALA297
|
4.7
|
12.8
|
1.0
|
O
|
B:GLN471
|
4.8
|
12.2
|
1.0
|
CE2
|
B:PHE296
|
4.9
|
15.5
|
1.0
|
CG
|
B:HIS313
|
4.9
|
14.2
|
1.0
|
C
|
B:SER298
|
4.9
|
14.2
|
1.0
|
O
|
B:PHE296
|
5.0
|
12.8
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 6lzr
Go back to
Chlorine Binding Sites List in 6lzr
Chlorine binding site 5 out
of 5 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl616
b:41.2
occ:1.00
|
O
|
B:HOH729
|
2.3
|
39.1
|
1.0
|
O
|
B:HOH770
|
3.2
|
16.3
|
1.0
|
O
|
B:HOH856
|
3.2
|
26.2
|
1.0
|
NH1
|
B:ARG387
|
3.2
|
15.8
|
1.0
|
O
|
B:HOH922
|
3.7
|
24.8
|
1.0
|
CD
|
B:ARG387
|
4.0
|
11.3
|
1.0
|
CD1
|
B:LEU356
|
4.0
|
18.8
|
1.0
|
CB
|
B:LEU356
|
4.1
|
12.7
|
1.0
|
CZ
|
B:ARG387
|
4.3
|
14.0
|
1.0
|
NE
|
B:ARG387
|
4.6
|
11.4
|
1.0
|
CA
|
B:TYR403
|
4.6
|
12.8
|
1.0
|
CG
|
B:LEU356
|
4.7
|
11.6
|
1.0
|
O
|
B:THR402
|
4.8
|
20.2
|
1.0
|
OE1
|
B:GLN358
|
4.8
|
16.5
|
1.0
|
N
|
B:ASP404
|
4.9
|
13.3
|
1.0
|
O
|
B:LEU356
|
5.0
|
11.9
|
1.0
|
|
Reference:
Y.Kitaoku,
P.Ubonbal,
L.T.Tran,
R.C.Robinson,
W.Suginta.
Structural Insight Into Chitin-Specific Solute-Binding Protein From Vibrio Harveyi To Be Published.
Page generated: Wed Mar 3 12:46:16 2021
|