Chlorine in PDB 6lzs: W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
Protein crystallography data
The structure of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose., PDB code: 6lzs
was solved by
Y.Kitaoku,
P.Ubonbal,
L.T.Tran,
R.C.Robinson,
W.Suginta,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.87 /
2.00
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.651,
80.379,
112.777,
90.19,
89.89,
79.08
|
R / Rfree (%)
|
21.4 /
28.2
|
Other elements in 6lzs:
The structure of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose. also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
(pdb code 6lzs). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose., PDB code: 6lzs:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 6lzs
Go back to
Chlorine Binding Sites List in 6lzs
Chlorine binding site 1 out
of 7 in the W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl607
b:29.7
occ:1.00
|
NE2
|
A:GLN471
|
3.1
|
28.6
|
1.0
|
OG
|
A:SER298
|
3.2
|
25.2
|
1.0
|
N
|
A:SER298
|
3.4
|
19.2
|
1.0
|
O
|
A:HOH803
|
3.4
|
21.4
|
1.0
|
CB
|
A:SER298
|
3.5
|
18.0
|
1.0
|
CD2
|
A:PHE296
|
3.7
|
20.6
|
1.0
|
N
|
A:ALA297
|
3.7
|
24.8
|
1.0
|
CG
|
A:GLN471
|
3.7
|
28.6
|
1.0
|
CB
|
A:PHE296
|
3.8
|
27.5
|
1.0
|
CA
|
A:HIS313
|
3.8
|
32.9
|
1.0
|
CD
|
A:GLN471
|
3.9
|
30.7
|
1.0
|
CA
|
A:PHE296
|
3.9
|
20.7
|
1.0
|
CB
|
A:ALA475
|
4.0
|
29.5
|
1.0
|
C
|
A:PHE296
|
4.1
|
27.5
|
1.0
|
CA
|
A:SER298
|
4.1
|
20.6
|
1.0
|
CG2
|
A:THR312
|
4.1
|
35.7
|
1.0
|
CG
|
A:PHE296
|
4.2
|
25.2
|
1.0
|
N
|
A:HIS313
|
4.2
|
29.0
|
1.0
|
CB
|
A:HIS313
|
4.3
|
33.7
|
1.0
|
CD2
|
A:HIS313
|
4.3
|
32.5
|
1.0
|
C
|
A:ALA297
|
4.4
|
26.3
|
1.0
|
CA
|
A:ALA297
|
4.4
|
24.0
|
1.0
|
CB
|
A:ALA297
|
4.5
|
26.6
|
1.0
|
C
|
A:THR312
|
4.6
|
28.7
|
1.0
|
CG
|
A:HIS313
|
4.6
|
31.9
|
1.0
|
O
|
A:THR312
|
4.6
|
23.6
|
1.0
|
CE2
|
A:PHE296
|
4.7
|
29.5
|
1.0
|
O
|
A:GLN471
|
4.9
|
31.4
|
1.0
|
O
|
A:PHE296
|
5.0
|
29.2
|
1.0
|
C
|
A:HIS313
|
5.0
|
36.4
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 6lzs
Go back to
Chlorine Binding Sites List in 6lzs
Chlorine binding site 2 out
of 7 in the W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl605
b:35.5
occ:1.00
|
OG
|
B:SER298
|
3.0
|
23.6
|
1.0
|
NE2
|
B:GLN471
|
3.3
|
35.2
|
1.0
|
CD2
|
B:PHE296
|
3.3
|
34.6
|
1.0
|
CB
|
B:SER298
|
3.5
|
35.5
|
1.0
|
N
|
B:SER298
|
3.5
|
31.1
|
1.0
|
CB
|
B:PHE296
|
3.7
|
32.3
|
1.0
|
CA
|
B:HIS313
|
3.7
|
45.1
|
1.0
|
N
|
B:ALA297
|
3.8
|
33.4
|
1.0
|
CA
|
B:PHE296
|
3.8
|
24.2
|
1.0
|
CG
|
B:PHE296
|
3.9
|
35.4
|
1.0
|
CB
|
B:ALA475
|
4.0
|
33.8
|
1.0
|
N
|
B:HIS313
|
4.0
|
45.4
|
1.0
|
CG
|
B:GLN471
|
4.1
|
36.4
|
1.0
|
C
|
B:PHE296
|
4.1
|
35.7
|
1.0
|
CB
|
B:HIS313
|
4.1
|
40.5
|
1.0
|
CG2
|
B:THR312
|
4.1
|
32.2
|
1.0
|
CD
|
B:GLN471
|
4.1
|
39.8
|
1.0
|
CA
|
B:SER298
|
4.2
|
31.6
|
1.0
|
CE2
|
B:PHE296
|
4.3
|
35.0
|
1.0
|
CD2
|
B:HIS313
|
4.5
|
38.5
|
1.0
|
C
|
B:THR312
|
4.5
|
41.4
|
1.0
|
CG
|
B:HIS313
|
4.5
|
38.0
|
1.0
|
C
|
B:ALA297
|
4.5
|
30.6
|
1.0
|
CA
|
B:ALA297
|
4.6
|
32.7
|
1.0
|
O
|
B:THR312
|
4.7
|
43.6
|
1.0
|
CB
|
B:ALA297
|
4.8
|
29.9
|
1.0
|
CB
|
B:THR312
|
4.9
|
44.6
|
1.0
|
C
|
B:HIS313
|
5.0
|
42.3
|
1.0
|
O
|
B:PHE296
|
5.0
|
32.5
|
1.0
|
|
Chlorine binding site 3 out
of 7 in 6lzs
Go back to
Chlorine Binding Sites List in 6lzs
Chlorine binding site 3 out
of 7 in the W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl606
b:17.7
occ:1.00
|
OG
|
C:SER298
|
3.1
|
22.2
|
1.0
|
O
|
C:HOH838
|
3.1
|
22.1
|
1.0
|
N
|
C:SER298
|
3.2
|
23.0
|
1.0
|
NE2
|
C:GLN471
|
3.3
|
20.9
|
1.0
|
CB
|
C:SER298
|
3.3
|
20.5
|
1.0
|
N
|
C:ALA297
|
3.5
|
17.8
|
1.0
|
CG
|
C:GLN471
|
3.8
|
19.2
|
1.0
|
CA
|
C:SER298
|
3.9
|
23.9
|
1.0
|
CB
|
C:PHE296
|
3.9
|
20.8
|
1.0
|
CB
|
C:ALA475
|
3.9
|
24.8
|
1.0
|
CA
|
C:PHE296
|
3.9
|
20.2
|
1.0
|
C
|
C:PHE296
|
3.9
|
23.7
|
1.0
|
CA
|
C:HIS313
|
4.0
|
29.7
|
1.0
|
CD2
|
C:PHE296
|
4.1
|
18.9
|
1.0
|
CD
|
C:GLN471
|
4.1
|
23.3
|
1.0
|
C
|
C:ALA297
|
4.1
|
24.0
|
1.0
|
CG2
|
C:THR312
|
4.2
|
29.0
|
1.0
|
CA
|
C:ALA297
|
4.2
|
17.6
|
1.0
|
CB
|
C:ALA297
|
4.2
|
16.6
|
1.0
|
N
|
C:HIS313
|
4.3
|
27.4
|
1.0
|
CG
|
C:PHE296
|
4.5
|
21.5
|
1.0
|
CD2
|
C:HIS313
|
4.5
|
23.8
|
1.0
|
O
|
C:THR312
|
4.5
|
20.0
|
1.0
|
C
|
C:THR312
|
4.6
|
21.1
|
1.0
|
CB
|
C:HIS313
|
4.6
|
31.1
|
1.0
|
O
|
C:GLN471
|
4.7
|
21.3
|
1.0
|
O
|
C:PHE296
|
4.8
|
23.2
|
1.0
|
CG
|
C:HIS313
|
4.9
|
25.9
|
1.0
|
C
|
C:SER298
|
4.9
|
18.4
|
1.0
|
N
|
C:GLY299
|
5.0
|
16.4
|
1.0
|
|
Chlorine binding site 4 out
of 7 in 6lzs
Go back to
Chlorine Binding Sites List in 6lzs
Chlorine binding site 4 out
of 7 in the W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl607
b:52.9
occ:1.00
|
O
|
C:LEU191
|
2.8
|
22.0
|
1.0
|
O
|
C:ALA188
|
3.2
|
24.8
|
1.0
|
OE2
|
C:GLU181
|
3.8
|
25.6
|
1.0
|
O
|
C:HOH716
|
3.9
|
36.7
|
1.0
|
C
|
C:LEU191
|
3.9
|
25.6
|
1.0
|
C
|
C:ALA188
|
4.2
|
21.5
|
1.0
|
OE1
|
C:GLU181
|
4.3
|
27.1
|
1.0
|
CD
|
C:GLU181
|
4.5
|
33.5
|
1.0
|
CB
|
C:LEU191
|
4.7
|
16.2
|
1.0
|
CA
|
C:LEU191
|
4.7
|
25.9
|
1.0
|
CB
|
C:ALA188
|
4.8
|
20.7
|
1.0
|
OD1
|
C:ASP192
|
4.9
|
31.5
|
1.0
|
N
|
C:LEU191
|
4.9
|
18.2
|
1.0
|
CA
|
C:ALA188
|
4.9
|
22.7
|
1.0
|
N
|
C:ASP192
|
4.9
|
25.2
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 6lzs
Go back to
Chlorine Binding Sites List in 6lzs
Chlorine binding site 5 out
of 7 in the W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl608
b:54.5
occ:1.00
|
O
|
C:GLU400
|
3.8
|
28.3
|
1.0
|
C
|
C:GLU400
|
4.3
|
22.3
|
1.0
|
CZ
|
C:PHE441
|
4.4
|
20.5
|
1.0
|
CE1
|
C:PHE441
|
4.4
|
15.5
|
1.0
|
O
|
C:LEU399
|
4.7
|
24.0
|
1.0
|
CE2
|
C:PHE441
|
4.8
|
15.8
|
1.0
|
N
|
C:GLY401
|
4.8
|
20.6
|
1.0
|
CA
|
C:GLY401
|
4.8
|
22.0
|
1.0
|
CD1
|
C:PHE441
|
4.9
|
16.8
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 6lzs
Go back to
Chlorine Binding Sites List in 6lzs
Chlorine binding site 6 out
of 7 in the W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl609
b:44.7
occ:1.00
|
CD1
|
C:PHE304
|
3.8
|
26.8
|
1.0
|
O
|
C:ALA303
|
3.9
|
17.3
|
1.0
|
CE1
|
C:PHE304
|
4.1
|
34.5
|
1.0
|
NE1
|
C:TRP307
|
4.3
|
18.4
|
1.0
|
CD1
|
C:TRP307
|
4.4
|
25.8
|
1.0
|
O
|
C:ALA414
|
4.6
|
17.2
|
1.0
|
O
|
B:HOH821
|
4.7
|
33.5
|
1.0
|
CA
|
C:PHE304
|
4.8
|
29.1
|
1.0
|
CG
|
C:PHE304
|
5.0
|
28.5
|
1.0
|
C
|
C:ALA303
|
5.0
|
25.1
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 6lzs
Go back to
Chlorine Binding Sites List in 6lzs
Chlorine binding site 7 out
of 7 in the W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of W363A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitobiose. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl608
b:22.6
occ:1.00
|
NE2
|
D:GLN471
|
3.1
|
33.6
|
1.0
|
OG
|
D:SER298
|
3.1
|
26.9
|
1.0
|
O
|
D:HOH850
|
3.2
|
33.6
|
1.0
|
CB
|
D:SER298
|
3.4
|
26.7
|
1.0
|
N
|
D:SER298
|
3.4
|
16.8
|
1.0
|
CG
|
D:GLN471
|
3.6
|
23.0
|
1.0
|
N
|
D:ALA297
|
3.8
|
25.9
|
1.0
|
CA
|
D:HIS313
|
3.8
|
33.2
|
1.0
|
CD
|
D:GLN471
|
3.8
|
27.4
|
1.0
|
CB
|
D:ALA475
|
3.9
|
16.7
|
1.0
|
CD2
|
D:PHE296
|
3.9
|
26.6
|
1.0
|
CB
|
D:PHE296
|
3.9
|
23.3
|
1.0
|
CA
|
D:SER298
|
4.0
|
24.3
|
1.0
|
CA
|
D:PHE296
|
4.0
|
18.1
|
1.0
|
CB
|
D:HIS313
|
4.1
|
31.9
|
1.0
|
C
|
D:PHE296
|
4.1
|
27.7
|
1.0
|
ND1
|
D:HIS313
|
4.2
|
37.7
|
1.0
|
N
|
D:HIS313
|
4.3
|
36.6
|
1.0
|
C
|
D:ALA297
|
4.4
|
21.2
|
1.0
|
CG
|
D:PHE296
|
4.4
|
27.0
|
1.0
|
CA
|
D:ALA297
|
4.4
|
23.8
|
1.0
|
CG2
|
D:THR312
|
4.5
|
29.8
|
1.0
|
CG
|
D:HIS313
|
4.6
|
32.5
|
1.0
|
CB
|
D:ALA297
|
4.6
|
26.8
|
1.0
|
C
|
D:THR312
|
4.7
|
33.2
|
1.0
|
O
|
D:GLN471
|
4.8
|
24.4
|
1.0
|
O
|
D:THR312
|
4.8
|
37.8
|
1.0
|
O
|
D:PHE296
|
4.9
|
21.1
|
1.0
|
|
Reference:
Y.Kitaoku,
P.Ubonbal,
L.T.Tran,
R.C.Robinson,
W.Suginta.
Structural Insight Into Chitin-Specific Solute-Binding Protein From Vibrio Harveyi To Be Published.
Page generated: Wed Mar 3 12:46:23 2021
|