Chlorine in PDB 6mr3: Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans
Protein crystallography data
The structure of Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans, PDB code: 6mr3
was solved by
P.J.Stogios,
M.Cuff,
X.Xu,
H.Cui,
R.Di Leo,
V.Yim,
S.Chin,
A.Savchenko,
A.J.Joachimiak,
Midwest Center For Structural Genomics (Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.21 /
2.05
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
152.030,
54.507,
111.013,
90.00,
125.38,
90.00
|
R / Rfree (%)
|
18.6 /
21.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans
(pdb code 6mr3). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans, PDB code: 6mr3:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6mr3
Go back to
Chlorine Binding Sites List in 6mr3
Chlorine binding site 1 out
of 4 in the Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl501
b:33.4
occ:0.66
|
N
|
A:VAL180
|
3.3
|
40.0
|
1.0
|
N
|
A:GLY255
|
3.5
|
39.5
|
1.0
|
CA
|
A:ARG179
|
3.7
|
43.1
|
1.0
|
CG
|
A:ARG179
|
3.7
|
39.7
|
1.0
|
CA
|
A:GLY255
|
3.8
|
43.6
|
1.0
|
C
|
A:ARG179
|
4.0
|
42.9
|
1.0
|
O
|
A:VAL180
|
4.0
|
36.4
|
1.0
|
CB
|
A:TYR254
|
4.0
|
36.7
|
1.0
|
CB
|
A:ARG179
|
4.2
|
42.4
|
1.0
|
CA
|
A:VAL180
|
4.2
|
39.2
|
1.0
|
C
|
A:TYR254
|
4.4
|
36.9
|
1.0
|
CB
|
A:VAL180
|
4.4
|
41.5
|
1.0
|
C
|
A:VAL180
|
4.6
|
37.2
|
1.0
|
O
|
A:SER178
|
4.6
|
46.5
|
1.0
|
CA
|
A:TYR254
|
4.6
|
34.9
|
1.0
|
O
|
A:HOH697
|
4.7
|
52.5
|
1.0
|
O
|
A:HOH748
|
4.7
|
45.1
|
1.0
|
C
|
A:GLY255
|
4.8
|
45.9
|
1.0
|
N
|
A:ARG179
|
4.8
|
45.8
|
1.0
|
CG2
|
A:VAL180
|
4.9
|
44.1
|
1.0
|
CG
|
A:TYR254
|
5.0
|
36.6
|
1.0
|
CD
|
A:ARG179
|
5.0
|
37.1
|
1.0
|
N
|
A:GLU256
|
5.0
|
52.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6mr3
Go back to
Chlorine Binding Sites List in 6mr3
Chlorine binding site 2 out
of 4 in the Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:45.6
occ:0.99
|
O
|
A:GLY355
|
3.1
|
17.4
|
1.0
|
N
|
A:LEU281
|
3.1
|
16.8
|
1.0
|
N
|
A:GLY355
|
3.1
|
19.6
|
1.0
|
CB
|
A:SER280
|
3.2
|
17.6
|
1.0
|
OG
|
A:SER280
|
3.2
|
19.7
|
1.0
|
CB
|
A:LEU281
|
3.3
|
18.0
|
1.0
|
CA
|
A:LEU281
|
3.6
|
17.5
|
1.0
|
OG1
|
A:THR354
|
3.6
|
26.4
|
1.0
|
CA
|
A:THR354
|
3.7
|
19.1
|
1.0
|
C
|
A:THR354
|
3.9
|
21.2
|
1.0
|
C
|
A:SER280
|
3.9
|
21.2
|
1.0
|
C
|
A:GLY355
|
4.0
|
19.2
|
1.0
|
O
|
A:HOH754
|
4.1
|
43.6
|
1.0
|
CA
|
A:GLY355
|
4.1
|
17.6
|
1.0
|
O
|
A:HOH764
|
4.1
|
28.0
|
1.0
|
CA
|
A:SER280
|
4.2
|
19.0
|
1.0
|
CD2
|
A:LEU281
|
4.2
|
16.8
|
1.0
|
O
|
A:HOH662
|
4.2
|
23.8
|
1.0
|
CB
|
A:THR354
|
4.2
|
21.4
|
1.0
|
CG
|
A:LEU281
|
4.3
|
18.1
|
1.0
|
O
|
A:LEU353
|
4.6
|
19.3
|
1.0
|
N
|
A:THR354
|
4.9
|
19.5
|
1.0
|
O
|
A:SER280
|
5.0
|
20.3
|
1.0
|
CD1
|
A:LEU281
|
5.0
|
16.3
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6mr3
Go back to
Chlorine Binding Sites List in 6mr3
Chlorine binding site 3 out
of 4 in the Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl501
b:31.8
occ:0.74
|
N
|
B:VAL180
|
3.2
|
40.0
|
1.0
|
N
|
B:GLY255
|
3.4
|
45.2
|
1.0
|
CA
|
B:ARG179
|
3.7
|
45.0
|
1.0
|
CA
|
B:GLY255
|
3.7
|
46.6
|
1.0
|
O
|
B:VAL180
|
3.9
|
35.2
|
1.0
|
C
|
B:ARG179
|
3.9
|
42.5
|
1.0
|
CB
|
B:TYR254
|
3.9
|
41.4
|
1.0
|
CG
|
B:ARG179
|
4.0
|
42.5
|
1.0
|
CA
|
B:VAL180
|
4.2
|
36.4
|
1.0
|
CB
|
B:ARG179
|
4.3
|
44.8
|
1.0
|
C
|
B:TYR254
|
4.3
|
41.6
|
1.0
|
CB
|
B:VAL180
|
4.3
|
43.7
|
1.0
|
C
|
B:VAL180
|
4.5
|
34.6
|
1.0
|
O
|
B:SER178
|
4.5
|
46.0
|
1.0
|
O
|
B:HOH804
|
4.6
|
48.6
|
1.0
|
CA
|
B:TYR254
|
4.6
|
38.1
|
1.0
|
C
|
B:GLY255
|
4.7
|
46.4
|
1.0
|
N
|
B:ARG179
|
4.7
|
42.1
|
1.0
|
CG2
|
B:VAL180
|
4.8
|
44.7
|
1.0
|
N
|
B:GLU256
|
4.9
|
48.3
|
1.0
|
CG
|
B:TYR254
|
4.9
|
41.4
|
1.0
|
CD1
|
B:TYR254
|
4.9
|
38.9
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6mr3
Go back to
Chlorine Binding Sites List in 6mr3
Chlorine binding site 4 out
of 4 in the Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the Competence-Damaged Protein (Cina) Superfamily Protein From Streptococcus Mutans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:30.4
occ:0.96
|
N
|
B:GLY187
|
3.2
|
21.5
|
1.0
|
O
|
B:HOH640
|
3.3
|
37.2
|
1.0
|
O
|
B:HOH774
|
3.5
|
30.1
|
1.0
|
CB
|
B:HIS190
|
3.7
|
30.1
|
1.0
|
ND1
|
B:HIS190
|
3.9
|
36.3
|
1.0
|
CA
|
B:ILE186
|
3.9
|
21.6
|
1.0
|
C
|
B:ILE186
|
4.0
|
21.3
|
1.0
|
CG1
|
B:ILE186
|
4.0
|
24.5
|
1.0
|
CA
|
B:GLY187
|
4.0
|
24.9
|
1.0
|
CG
|
B:HIS190
|
4.2
|
33.9
|
1.0
|
CB
|
B:ILE186
|
4.5
|
23.3
|
1.0
|
O
|
B:GLY185
|
4.6
|
28.5
|
1.0
|
O
|
B:GLY187
|
4.9
|
24.0
|
1.0
|
C
|
B:GLY187
|
4.9
|
24.7
|
1.0
|
N
|
B:ILE186
|
5.0
|
23.6
|
1.0
|
|
Reference:
P.J.Stogios,
P.J.Stogios,
M.Cuff,
X.Xu,
H.Cui,
R.Di Leo,
V.Yim,
S.Chin,
A.Savchenko,
A.J.Joachimiak,
Midwest Center For Structural Genomics (Mcsg).
N/A N/A.
Page generated: Sun Jul 28 03:23:24 2024
|