Chlorine in PDB 6nv0: Structural Basis For Anti-Alpha-Galactosyl Response
Protein crystallography data
The structure of Structural Basis For Anti-Alpha-Galactosyl Response, PDB code: 6nv0
was solved by
D.B.Langley,
D.Christ,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
42.97 /
2.31
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
86.937,
65.931,
151.513,
90.00,
90.91,
90.00
|
R / Rfree (%)
|
19.6 /
26.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structural Basis For Anti-Alpha-Galactosyl Response
(pdb code 6nv0). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Structural Basis For Anti-Alpha-Galactosyl Response, PDB code: 6nv0:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 6nv0
Go back to
Chlorine Binding Sites List in 6nv0
Chlorine binding site 1 out
of 5 in the Structural Basis For Anti-Alpha-Galactosyl Response
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structural Basis For Anti-Alpha-Galactosyl Response within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Cl301
b:59.9
occ:1.00
|
O
|
L:SER161
|
3.3
|
38.8
|
1.0
|
N
|
L:SER161
|
3.5
|
44.8
|
1.0
|
OE1
|
L:GLN160
|
3.8
|
39.1
|
1.0
|
CA
|
L:GLN160
|
4.0
|
44.6
|
1.0
|
CD
|
L:GLN160
|
4.1
|
37.6
|
1.0
|
ND2
|
L:ASN163
|
4.1
|
35.2
|
1.0
|
C
|
L:GLN160
|
4.2
|
45.1
|
1.0
|
C
|
L:SER161
|
4.3
|
42.6
|
1.0
|
NE2
|
L:GLN160
|
4.3
|
33.0
|
1.0
|
CA
|
L:SER161
|
4.4
|
41.9
|
1.0
|
CB
|
L:GLN160
|
4.5
|
39.6
|
1.0
|
CG
|
L:ASN163
|
4.5
|
39.4
|
1.0
|
OD1
|
L:ASN163
|
4.6
|
37.6
|
1.0
|
O
|
L:LEU159
|
4.6
|
45.2
|
1.0
|
CB
|
L:SER161
|
4.8
|
44.2
|
1.0
|
CG
|
L:GLN160
|
4.9
|
38.6
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 6nv0
Go back to
Chlorine Binding Sites List in 6nv0
Chlorine binding site 2 out
of 5 in the Structural Basis For Anti-Alpha-Galactosyl Response
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structural Basis For Anti-Alpha-Galactosyl Response within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Cl302
b:47.5
occ:1.00
|
O
|
L:HOH401
|
3.4
|
33.6
|
1.0
|
NH1
|
L:ARG66
|
3.5
|
49.9
|
1.0
|
NH1
|
L:ARG50
|
3.6
|
45.5
|
1.0
|
NH2
|
L:ARG50
|
3.7
|
42.3
|
1.0
|
CD
|
L:PRO64
|
3.7
|
32.1
|
1.0
|
CG
|
L:PRO64
|
3.7
|
35.9
|
1.0
|
CE2
|
L:PHE67
|
3.9
|
38.2
|
1.0
|
CZ
|
L:ARG50
|
4.1
|
42.0
|
1.0
|
CZ
|
L:ARG66
|
4.4
|
45.9
|
1.0
|
NH2
|
L:ARG44
|
4.5
|
38.4
|
1.0
|
CZ
|
L:PHE67
|
4.6
|
37.7
|
1.0
|
NE
|
L:ARG66
|
4.7
|
48.7
|
1.0
|
CD2
|
L:PHE67
|
4.7
|
36.7
|
1.0
|
OD1
|
L:ASP87
|
4.8
|
41.0
|
1.0
|
OE2
|
L:GLU86
|
4.8
|
52.5
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 6nv0
Go back to
Chlorine Binding Sites List in 6nv0
Chlorine binding site 3 out
of 5 in the Structural Basis For Anti-Alpha-Galactosyl Response
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structural Basis For Anti-Alpha-Galactosyl Response within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl301
b:34.5
occ:1.00
|
CE
|
C:LYS212
|
3.9
|
40.4
|
1.0
|
CD
|
C:LYS212
|
3.9
|
38.7
|
1.0
|
NZ
|
C:LYS212
|
4.0
|
39.1
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 6nv0
Go back to
Chlorine Binding Sites List in 6nv0
Chlorine binding site 4 out
of 5 in the Structural Basis For Anti-Alpha-Galactosyl Response
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structural Basis For Anti-Alpha-Galactosyl Response within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl301
b:55.7
occ:1.00
|
N
|
D:THR165
|
3.3
|
36.9
|
1.0
|
N
|
D:SER166
|
3.4
|
35.7
|
1.0
|
O
|
D:ALA163
|
3.7
|
35.1
|
1.0
|
CD1
|
D:LEU164
|
3.7
|
38.7
|
1.0
|
CB
|
D:SER166
|
3.7
|
35.4
|
1.0
|
CA
|
D:LEU164
|
3.8
|
38.8
|
1.0
|
OG1
|
D:THR165
|
3.8
|
46.3
|
1.0
|
C
|
D:LEU164
|
4.1
|
36.5
|
1.0
|
CA
|
D:SER166
|
4.2
|
33.2
|
1.0
|
CA
|
D:THR165
|
4.3
|
40.8
|
1.0
|
C
|
D:THR165
|
4.4
|
39.5
|
1.0
|
C
|
D:ALA163
|
4.6
|
39.7
|
1.0
|
CB
|
D:THR165
|
4.7
|
45.9
|
1.0
|
CB
|
D:LEU164
|
4.7
|
35.9
|
1.0
|
N
|
D:LEU164
|
4.7
|
35.9
|
1.0
|
O
|
D:SER166
|
4.8
|
32.5
|
1.0
|
CG
|
D:LEU164
|
4.8
|
38.4
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 6nv0
Go back to
Chlorine Binding Sites List in 6nv0
Chlorine binding site 5 out
of 5 in the Structural Basis For Anti-Alpha-Galactosyl Response
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Structural Basis For Anti-Alpha-Galactosyl Response within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl302
b:70.9
occ:1.00
|
O
|
D:GLY179
|
3.3
|
30.1
|
1.0
|
CD2
|
D:LEU180
|
3.4
|
30.1
|
1.0
|
CG
|
D:PHE151
|
3.5
|
31.2
|
1.0
|
CD1
|
D:PHE151
|
3.5
|
33.0
|
1.0
|
CB
|
D:ALA119
|
3.8
|
24.3
|
1.0
|
CB
|
D:PHE151
|
3.8
|
29.7
|
1.0
|
C
|
D:GLY179
|
3.8
|
29.2
|
1.0
|
CD2
|
D:PHE151
|
3.9
|
31.5
|
1.0
|
CE1
|
D:PHE151
|
4.0
|
31.5
|
1.0
|
N
|
D:LEU180
|
4.3
|
26.6
|
1.0
|
CG
|
D:LEU180
|
4.4
|
31.4
|
1.0
|
CE2
|
D:PHE151
|
4.4
|
33.4
|
1.0
|
CA
|
D:LEU180
|
4.4
|
28.2
|
1.0
|
CZ
|
D:PHE151
|
4.4
|
34.4
|
1.0
|
O
|
D:SER120
|
4.5
|
31.4
|
1.0
|
CA
|
D:GLY179
|
4.7
|
29.8
|
1.0
|
CB
|
D:LEU180
|
4.9
|
27.2
|
1.0
|
|
Reference:
D.B.Langley,
D.Christ.
Genetic and Structural Basis For the Human Anti-Alpha-Galactosyl Response To Be Published.
Page generated: Sat Dec 12 13:24:51 2020
|