Chlorine in PDB 6ynm: Crystal Structure of YTHDC1 with Compound DHU_DC1_096

The structure of Crystal Structure of YTHDC1 with Compound DHU_DC1_096, PDB code: 6ynm was solved by R.K.Bedi, D.Huang, L.Wiedmer, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.52 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	39.400, 102.910, 42.110, 90.00, 105.78, 90.00
R / Rfree (%)	19.7 / 23.1

The binding sites of Chlorine atom in the Crystal Structure of YTHDC1 with Compound DHU_DC1_096 (pdb code 6ynm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of YTHDC1 with Compound DHU_DC1_096, PDB code: 6ynm:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of YTHDC1 with Compound DHU_DC1_096


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of YTHDC1 with Compound DHU_DC1_096 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:42.7 occ:1.00 CL1 B:P1Q601 0.0 42.7 1.0 C16 B:P1Q601 1.8 36.6 1.0 C15 B:P1Q601 2.8 42.0 1.0 C18 B:P1Q601 2.8 37.0 1.0 O B:SER435 2.9 34.3 1.0 N B:LEU439 3.8 32.0 1.0 CB B:MET434 3.9 34.7 1.0 CG B:LEU439 3.9 27.5 1.0 C B:MET438 3.9 33.6 1.0 C B:SER435 3.9 37.3 1.0 CD2 B:LEU439 4.0 28.6 1.0 C14 B:P1Q601 4.1 36.9 1.0 CD2 B:LEU430 4.1 24.1 1.0 CA B:LEU439 4.1 32.2 1.0 C12 B:P1Q601 4.1 35.3 1.0 CB B:MET438 4.1 39.9 1.0 O B:MET438 4.2 32.1 1.0 N B:SER435 4.2 38.9 1.0 CA B:MET438 4.4 31.8 1.0 CB B:LEU439 4.5 27.4 1.0 CD1 B:LEU430 4.6 29.6 1.0 C13 B:P1Q601 4.6 37.5 1.0 CG B:MET434 4.7 39.2 1.0 N B:MET438 4.7 33.6 1.0 CA B:SER435 4.7 38.5 1.0 N B:ALA436 4.8 37.5 1.0 CA B:ALA436 4.8 35.7 1.0 CG B:LEU430 4.8 24.8 1.0 C B:MET434 4.8 35.7 1.0 CE B:MET438 4.8 41.1 1.0 CA B:MET434 4.9 35.9 1.0 O B:HOH787 4.9 37.1 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of YTHDC1 with Compound DHU_DC1_096


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of YTHDC1 with Compound DHU_DC1_096 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl602 b:32.3 occ:1.00 CL1 B:P1Q602 0.0 32.3 1.0 C16 B:P1Q602 1.8 29.3 1.0 C15 B:P1Q602 2.8 31.0 1.0 C18 B:P1Q602 2.8 30.3 1.0 O B:HOH807 3.6 22.4 1.0 CD1 B:TYR350 4.0 23.6 1.0 C14 B:P1Q602 4.1 31.9 1.0 C12 B:P1Q602 4.1 34.2 1.0 CB B:TYR350 4.3 18.4 1.0 O B:HOH899 4.4 26.2 1.0 CG B:TYR350 4.4 20.8 1.0 C13 B:P1Q602 4.6 33.6 1.0 CE1 B:TYR350 4.8 25.6 1.0

R.K.Bedi, D.Huang, L.Wiedmer, A.Caflisch. Crystal Structure of YTHDC1 with Compound DHU_DC1_096 To Be Published.