Chlorine in PDB 6zyu: Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549

The structure of Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549, PDB code: 6zyu was solved by J.Dorosz, K.M.Christensen, J.S.Kastrup, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.09 / 1.90
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	114.324, 163.084, 47.449, 90, 90, 90
R / Rfree (%)	16.2 / 18.7

The structure of Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549 also contains other interesting chemical elements:

Fluorine	(F)	6 atoms
Arsenic	(As)	1 atom
Zinc	(Zn)	8 atoms

The binding sites of Chlorine atom in the Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549 (pdb code 6zyu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549, PDB code: 6zyu:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl312 b:49.2 occ:1.00 O A:HOH600 2.5 32.5 1.0 O A:HOH508 2.6 33.6 1.0 OG1 A:THR93 3.0 19.1 1.0 CG2 A:VAL95 3.3 26.1 1.0 CG2 A:THR93 3.6 17.6 1.0 CB A:THR93 3.6 17.3 1.0 NE A:ARG96 3.7 17.8 1.0 CG A:ARG96 4.1 18.0 1.0 CD A:ARG96 4.1 18.1 1.0 CZ A:ARG96 4.1 18.2 1.0 NH2 A:ARG96 4.5 16.6 1.0 CG A:GLU145 4.5 27.4 0.5 CA A:SER142 4.6 21.9 1.0 CB A:SER142 4.6 21.8 1.0 CG A:GLU145 4.6 32.1 0.5 O A:HOH534 4.7 25.5 1.0 CB A:GLU145 4.7 27.0 0.5 CB A:GLU145 4.7 27.1 0.5 NH1 A:ARG96 4.8 16.2 1.0 O A:HOH560 4.8 33.1 1.0 CB A:VAL95 4.8 25.1 1.0 O A:GLY62 4.9 26.9 1.0 N A:ARG96 4.9 14.4 1.0

Chlorine binding site 2 out of 5 in the Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl313 b:66.5 occ:1.00 ND2 A:ASN29 3.1 22.2 1.0 O A:HOH462 3.4 31.6 1.0 O A:HOH570 3.4 25.3 1.0 OH A:TYR51 4.0 22.5 1.0 CG A:ASN29 4.0 26.1 1.0 CB A:ASN29 4.0 21.1 1.0 CZ A:TYR51 4.1 22.3 1.0 CE2 A:TYR51 4.3 20.3 1.0 O A:HOH536 4.4 33.5 1.0 CE1 A:TYR51 4.6 19.9 1.0 O A:TYR51 4.7 19.8 1.0 O A:HOH616 4.8 43.6 1.0 O A:HOH557 5.0 47.1 1.0 CD2 A:TYR51 5.0 18.9 1.0

Chlorine binding site 3 out of 5 in the Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl314 b:73.1 occ:1.00 NZ A:LYS253 3.2 30.6 1.0 CD A:LYS253 3.9 22.2 1.0 CE A:LYS253 4.0 26.9 1.0 CD2 A:LEU250 4.2 23.6 1.0 OD1 A:ASP38 4.2 21.7 1.0 CG A:ASP38 4.7 21.5 1.0

Chlorine binding site 4 out of 5 in the Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl310 b:54.3 occ:1.00 O B:HOH493 2.7 32.3 1.0 OG1 B:THR93 2.9 24.4 1.0 CG2 B:VAL95 3.4 30.0 1.0 CG2 B:THR93 3.5 24.0 1.0 CB B:THR93 3.5 22.5 1.0 NE B:ARG96 3.7 21.2 1.0 CG B:ARG96 4.0 21.3 1.0 CD B:ARG96 4.0 20.5 1.0 CZ B:ARG96 4.2 21.8 1.0 O B:HOH522 4.3 40.3 1.0 O C:HOH481 4.5 28.4 1.0 CB B:SER142 4.5 27.9 1.0 NH2 B:ARG96 4.6 24.9 1.0 CA B:SER142 4.6 26.9 1.0 CG B:GLU145 4.6 50.5 1.0 CB B:GLU145 4.7 36.7 1.0 NH1 B:ARG96 4.8 17.3 1.0 CB B:VAL95 4.8 28.4 1.0 N B:ARG96 4.9 19.8 1.0 CA B:THR93 5.0 20.6 1.0

Chlorine binding site 5 out of 5 in the Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl310 b:41.3 occ:1.00 O C:HOH459 2.8 36.3 1.0 OG1 C:THR93 3.1 24.5 1.0 NH2 C:ARG149 3.6 53.9 1.0 NH1 C:ARG149 3.6 57.5 1.0 CB C:THR93 3.7 22.3 1.0 CG2 C:THR93 3.7 23.6 1.0 O C:HOH449 3.9 41.9 1.0 NE C:ARG96 4.1 20.4 1.0 CZ C:ARG149 4.1 55.5 1.0 CG C:ARG96 4.2 17.1 1.0 CB C:GLU145 4.2 34.3 1.0 CD C:ARG96 4.3 20.1 1.0 CB C:VAL95 4.4 34.1 1.0 CG C:GLU145 4.4 39.5 1.0 CZ C:ARG96 4.6 21.8 1.0 O C:HOH521 4.6 38.9 1.0 CA C:SER142 4.7 27.1 1.0 CB C:SER142 4.7 25.5 1.0 CG1 C:VAL95 4.8 39.0 1.0 N C:ARG96 4.9 19.4 1.0 NH2 C:ARG96 4.9 22.9 1.0

J.Dorosz, K.M.Christensen, J.S.Kastrup. Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549 To Be Published.