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Chlorine in PDB 7cvl: Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms)

Enzymatic activity of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms)

All present enzymatic activity of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms):
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms), PDB code: 7cvl was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.18 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.450, 79.450, 38.470, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 21.5

Other elements in 7cvl:

The structure of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms) (pdb code 7cvl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms), PDB code: 7cvl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7cvl

Go back to Chlorine Binding Sites List in 7cvl
Chlorine binding site 1 out of 2 in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:26.6
occ:1.00
HH A:TYR41 2.4 22.9 1.0
OH A:TYR41 3.0 19.1 1.0
HE2 A:TYR41 3.2 22.1 1.0
O A:HOH351 3.4 25.5 1.0
HA3 A:GLY122 3.5 25.6 1.0
CZ A:TYR41 3.7 16.6 1.0
CE2 A:TYR41 3.8 18.4 1.0
HA2 A:GLY122 4.0 25.6 1.0
CA A:GLY122 4.2 21.3 1.0
O A:HOH318 4.6 29.9 1.0
O A:ARG39 4.7 25.1 1.0
H A:MET123 4.8 18.7 1.0
N A:GLY122 4.8 18.5 1.0
CE1 A:TYR41 4.9 19.0 1.0
CD2 A:TYR41 5.0 17.5 1.0

Chlorine binding site 2 out of 2 in 7cvl

Go back to Chlorine Binding Sites List in 7cvl
Chlorine binding site 2 out of 2 in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:33.4
occ:1.00
H A:GLY44 2.3 21.9 1.0
HG A:SER42 2.8 31.7 1.0
HA A:GLN139 2.8 30.9 1.0
HB2 A:SER42 2.8 28.0 1.0
HA3 A:GLY44 3.0 22.2 1.0
OG A:SER42 3.1 26.4 1.0
N A:GLY44 3.1 18.2 1.0
HD11 A:ILE142 3.2 45.1 1.0
HB2 A:GLN139 3.4 43.9 1.0
CB A:SER42 3.4 23.3 1.0
HG12 A:ILE142 3.5 33.5 1.0
HG23 A:VAL138 3.5 26.9 1.0
CA A:GLY44 3.6 18.4 1.0
CA A:GLN139 3.6 25.7 1.0
HD13 A:ILE142 3.8 45.1 1.0
CD1 A:ILE142 3.9 37.5 1.0
CB A:GLN139 3.9 36.6 1.0
H A:LEU43 4.0 22.2 1.0
N A:GLN139 4.0 25.1 1.0
HB3 A:SER42 4.1 28.0 1.0
N A:LEU43 4.1 18.4 1.0
CG1 A:ILE142 4.2 27.9 1.0
HA2 A:GLY44 4.2 22.2 1.0
HG2 A:GLN139 4.2 59.4 1.0
C A:SER42 4.2 22.6 1.0
HB3 A:LEU43 4.3 27.4 1.0
H A:ASN45 4.3 20.1 1.0
C A:LEU43 4.3 17.1 1.0
H A:GLN139 4.3 30.1 1.0
C A:VAL138 4.4 25.7 1.0
O A:VAL138 4.4 22.3 1.0
CG2 A:VAL138 4.5 22.4 1.0
CA A:SER42 4.5 20.5 1.0
HG13 A:ILE142 4.5 33.5 1.0
CG A:GLN139 4.6 49.5 1.0
C A:GLY44 4.6 15.9 1.0
CA A:LEU43 4.6 17.0 1.0
O A:SER42 4.7 19.4 1.0
HG21 A:VAL138 4.7 26.9 1.0
HD12 A:ILE142 4.7 45.1 1.0
N A:ASN45 4.7 16.7 1.0
HB3 A:GLN139 4.8 43.9 1.0
HG3 A:GLN139 4.8 59.4 1.0
C A:GLN139 4.8 22.7 1.0
HB A:VAL138 4.9 27.7 1.0
HA A:SER42 5.0 24.6 1.0
CB A:LEU43 5.0 22.8 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Mon Jul 29 19:55:45 2024

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