Chlorine in PDB 7dhd: Vibrio Vulnificus Wzb

All present enzymatic activity of Vibrio Vulnificus Wzb:
3.1.3.48;

The structure of Vibrio Vulnificus Wzb, PDB code: 7dhd was solved by Q.Ma, X.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.66 / 1.71
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.315, 48.741, 117.316, 90, 90, 90
R / Rfree (%)	19.9 / 22.3

The binding sites of Chlorine atom in the Vibrio Vulnificus Wzb (pdb code 7dhd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Vibrio Vulnificus Wzb, PDB code: 7dhd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Vibrio Vulnificus Wzb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Vibrio Vulnificus Wzb within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:23.7 occ:1.00 O A:HOH370 3.0 21.5 1.0 NH2 A:ARG15 3.1 19.9 1.0 N A:VAL10 3.1 16.8 1.0 O A:HOH307 3.3 27.4 1.0 N A:GLY11 3.4 18.4 1.0 O A:HOH391 3.4 22.6 1.0 CB A:VAL10 3.6 22.0 1.0 CA A:VAL10 3.7 17.4 1.0 SG A:CYS9 3.7 19.1 1.0 CB A:CYS9 3.8 15.6 1.0 O A:HOH447 4.0 33.4 1.0 C A:VAL10 4.0 20.4 1.0 CZ A:ARG15 4.1 36.8 1.0 NE A:ARG15 4.2 26.1 1.0 C A:CYS9 4.2 20.3 1.0 O B:HOH416 4.2 40.9 1.0 CG2 A:VAL10 4.2 22.0 1.0 O A:HOH356 4.3 26.6 1.0 CA A:GLY11 4.4 19.0 1.0 OD1 A:ASP119 4.4 21.7 1.0 OD2 A:ASP119 4.5 26.4 1.0 CG A:ASP119 4.5 23.0 1.0 CA A:CYS9 4.6 15.6 1.0 CG1 A:VAL10 4.7 21.8 1.0 N A:ASN12 5.0 18.4 1.0

Chlorine binding site 2 out of 2 in the Vibrio Vulnificus Wzb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Vibrio Vulnificus Wzb within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:32.5 occ:1.00 O B:HOH338 3.0 29.4 1.0 NH2 B:ARG15 3.1 27.5 1.0 O B:HOH311 3.2 38.1 1.0 N B:VAL10 3.2 23.1 1.0 N B:GLY11 3.4 24.5 1.0 O B:HOH356 3.5 25.2 1.0 CB B:VAL10 3.6 27.4 1.0 SG B:CYS9 3.7 28.6 1.0 CA B:VAL10 3.7 23.0 1.0 CB B:CYS9 3.8 25.4 1.0 O B:HOH406 3.9 50.5 1.0 O B:HOH408 4.1 56.5 1.0 C B:VAL10 4.1 27.0 1.0 CZ B:ARG15 4.1 43.1 1.0 O B:HOH362 4.2 28.3 1.0 NE B:ARG15 4.2 36.0 1.0 CG2 B:VAL10 4.2 27.7 1.0 C B:CYS9 4.3 26.9 1.0 OD2 B:ASP119 4.5 39.8 1.0 CA B:GLY11 4.5 25.3 1.0 OD1 B:ASP119 4.5 36.4 1.0 CA B:CYS9 4.6 24.4 1.0 CG B:ASP119 4.6 36.5 1.0 CG1 B:VAL10 4.8 26.8 1.0

X.Wang, Q.Ma. Wzb of Vibrio Vulnificus Represents A New Group of Low Molecular Weight Protein Tyrosine Phosphatases with A Unique Insertion in the W-Loop J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X