Chlorine in PDB 7kb3: The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form

Protein crystallography data

The structure of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form, PDB code: 7kb3 was solved by K.Tan, R.Wu, R.Jedrzejczak, A.Joachimiak, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.07 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 112.085, 116.677, 120.747, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 22.7

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Chlorine atom in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form (pdb code 7kb3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 22 binding sites of Chlorine where determined in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form, PDB code: 7kb3:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 22 in 7kb3

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Chlorine binding site 1 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:58.5
occ:0.92
 OG A:SER197 3.0 54.8 1.0
NH2 C:ARG245 3.1 54.2 1.0
N A:SER197 3.2 45.0 1.0
NH1 C:ARG245 3.5 53.3 1.0
CB A:SER197 3.6 43.3 1.0
CZ C:ARG245 3.8 51.3 1.0
CA A:SER197 4.0 47.4 1.0
CA A:ALA196 4.0 47.5 1.0
CD B:ARG245 4.0 44.5 1.0
C A:ALA196 4.1 44.4 1.0
CG2 C:ILE243 4.1 53.4 1.0
CB A:ALA196 4.1 46.3 1.0
CD1 C:ILE243 4.1 61.4 1.0
O B:HOH405 4.3 59.1 1.0
N B:GLY246 4.3 44.1 1.0
CA B:ARG245 4.3 46.4 1.0
CB B:ARG245 4.6 43.7 1.0
CG D:PRO41 4.6 62.8 1.0
C B:ARG245 4.7 46.5 1.0
N A:MET198 4.8 45.8 1.0
C A:SER197 4.9 50.4 1.0
CG B:ARG245 5.0 41.0 1.0

Chlorine binding site 2 out of 22 in 7kb3

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Chlorine binding site 2 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:57.7
occ:1.00
 OG C:SER197 3.2 43.4 1.0
NH2 A:ARG245 3.2 50.9 1.0
NH1 A:ARG245 3.3 50.2 1.0
N C:SER197 3.5 41.8 1.0
CZ A:ARG245 3.7 52.8 1.0
CD D:ARG245 3.8 50.1 1.0
CB C:SER197 3.9 44.4 1.0
N D:GLY246 3.9 47.0 1.0
CA D:ARG245 4.0 48.6 1.0
CD1 A:ILE243 4.1 60.8 1.0
O A:PHE242 4.1 72.6 1.0
CB C:ALA196 4.2 40.4 1.0
CB D:ARG245 4.2 41.8 1.0
CA C:ALA196 4.2 44.1 1.0
CA C:SER197 4.3 42.3 1.0
C D:ARG245 4.3 52.2 1.0
C C:ALA196 4.4 41.9 1.0
CG2 A:ILE243 4.5 55.9 1.0
CA A:ILE243 4.5 64.3 1.0
CG D:ARG245 4.7 45.3 1.0
O D:GLN244 4.9 47.0 1.0
NE D:ARG245 4.9 47.7 1.0
CA D:GLY246 4.9 51.0 1.0
N C:MET198 5.0 42.1 1.0
CB A:ILE243 5.0 60.5 1.0

Chlorine binding site 3 out of 22 in 7kb3

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Chlorine binding site 3 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:89.8
occ:1.00
 NE A:ARG119 3.0 79.0 1.0
NH2 A:ARG119 3.1 88.6 1.0
CZ A:ARG119 3.4 85.4 1.0
CD A:ARG119 4.1 63.9 1.0
CD2 A:LEU105 4.2 78.0 1.0
CG A:ARG119 4.3 64.8 1.0
CD1 A:LEU97 4.3 70.6 1.0
O A:CYS101 4.4 83.8 1.0
NH1 A:ARG119 4.7 76.0 1.0
CB A:ARG119 4.7 58.0 1.0
C A:CYS101 4.8 76.0 1.0

Chlorine binding site 4 out of 22 in 7kb3

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Chlorine binding site 4 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:93.8
occ:1.00
 OH A:TYR149 3.6 71.6 1.0
CE1 A:TYR153 3.9 76.0 1.0
CB A:SER126 4.0 71.1 1.0
CZ A:TYR153 4.1 70.4 1.0
CD1 A:TYR153 4.1 70.6 1.0
CL A:CL308 4.2 77.3 0.9
CA A:SER126 4.3 71.9 1.0
OH A:TYR153 4.5 76.7 1.0
CE2 A:TYR153 4.5 64.5 1.0
O A:GLY124 4.5 73.0 1.0
CG A:TYR153 4.6 65.1 1.0
CZ A:TYR149 4.7 66.7 1.0
N A:SER126 4.7 68.0 1.0
CD2 A:TYR153 4.7 66.5 1.0
O A:HOH440 4.8 60.6 1.0
O A:SER125 5.0 67.8 1.0
C A:SER125 5.0 69.8 1.0

Chlorine binding site 5 out of 22 in 7kb3

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Chlorine binding site 5 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:77.3
occ:0.88
 O A:HOH406 2.7 64.4 1.0
OH A:TYR149 2.9 71.6 1.0
CE2 A:TYR149 3.4 58.8 1.0
CD A:GLN156 3.5 71.6 1.0
NE2 A:GLN156 3.6 79.0 1.0
CZ A:TYR149 3.6 66.7 1.0
CG A:GLN156 3.7 65.6 1.0
OE1 A:GLN156 3.9 80.8 1.0
O A:LEU127 4.0 65.2 1.0
CL A:CL307 4.2 93.8 1.0
CB A:SER126 4.4 71.1 1.0
N A:LEU127 4.7 64.3 1.0
CD2 A:TYR149 4.7 56.2 1.0
CB A:GLN156 4.8 65.5 1.0
C A:LEU127 4.9 60.6 1.0
CE1 A:TYR149 4.9 59.1 1.0
CA A:SER126 4.9 71.9 1.0

Chlorine binding site 6 out of 22 in 7kb3

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Chlorine binding site 6 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl309

b:67.5
occ:0.83
 OG D:SER39 3.0 66.8 1.0
N A:GLY210 3.4 76.7 1.0
CG D:GLU42 3.7 75.2 1.0
OE2 D:GLU42 3.9 87.8 1.0
CG A:ARG208 4.0 52.8 1.0
CD A:ARG208 4.0 59.0 1.0
CA A:LYS209 4.1 65.5 1.0
NE A:ARG208 4.1 63.4 1.0
CB D:PRO41 4.1 59.9 1.0
CD D:GLU42 4.1 78.5 1.0
O A:ARG208 4.2 59.8 1.0
C A:LYS209 4.2 65.7 1.0
CA A:GLY210 4.2 66.3 1.0
O A:GLY210 4.3 64.0 1.0
CB D:SER39 4.3 75.7 1.0
CG D:PRO41 4.4 62.8 1.0
C A:ARG208 4.4 55.2 1.0
N A:LYS209 4.4 64.7 1.0
N D:GLU42 4.5 63.0 1.0
CD D:PRO41 4.7 62.5 1.0
C A:GLY210 4.8 74.8 1.0
CB A:ARG208 4.8 53.1 1.0
CB D:GLU42 4.8 67.3 1.0
CZ A:ARG208 4.8 66.2 1.0

Chlorine binding site 7 out of 22 in 7kb3

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Chlorine binding site 7 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl310

b:68.3
occ:0.82
 OG A:SER39 2.7 69.4 1.0
N D:GLY210 3.3 71.6 1.0
CB A:SER39 3.5 74.4 1.0
CG A:GLU42 3.8 72.5 1.0
CG D:ARG208 3.9 65.8 1.0
OE2 A:GLU42 3.9 81.7 1.0
CD D:ARG208 3.9 61.8 1.0
CB A:PRO41 4.0 55.5 1.0
NE D:ARG208 4.0 66.2 1.0
CA D:GLY210 4.0 76.5 1.0
CD A:GLU42 4.0 78.5 1.0
CG A:PRO41 4.0 57.2 1.0
O D:ARG208 4.2 61.5 1.0
O D:GLY210 4.2 82.5 1.0
CD A:PRO41 4.2 62.4 1.0
C D:LYS209 4.3 71.6 1.0
CA D:LYS209 4.3 64.3 1.0
C D:ARG208 4.4 65.2 1.0
N A:GLU42 4.4 57.1 1.0
N D:LYS209 4.5 67.4 1.0
C D:GLY210 4.6 77.8 1.0
CB D:ARG208 4.7 58.8 1.0
CZ D:ARG208 4.8 70.7 1.0
CB A:GLU42 4.8 64.8 1.0
OE1 A:GLU42 4.8 80.5 1.0
CA A:PRO41 4.9 62.3 1.0
N A:PRO41 4.9 52.5 1.0
CA A:SER39 4.9 72.8 1.0
C A:PRO41 5.0 60.5 1.0

Chlorine binding site 8 out of 22 in 7kb3

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Chlorine binding site 8 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:52.1
occ:0.82
 OG D:SER197 3.1 45.7 1.0
NH1 B:ARG245 3.2 49.0 1.0
N D:SER197 3.3 53.5 1.0
NH2 B:ARG245 3.4 54.8 1.0
CZ B:ARG245 3.8 50.7 1.0
CB D:SER197 3.8 49.0 1.0
N C:GLY246 4.0 51.7 1.0
CD C:ARG245 4.0 48.7 1.0
CB D:ALA196 4.0 50.3 1.0
CA D:ALA196 4.1 55.0 1.0
O B:PHE242 4.1 72.9 1.0
O B:HOH403 4.1 57.0 1.0
CA C:ARG245 4.1 49.3 1.0
CD1 B:ILE243 4.2 59.7 1.0
CA D:SER197 4.2 60.3 1.0
C D:ALA196 4.2 52.0 1.0
CB C:ARG245 4.3 46.2 1.0
C C:ARG245 4.5 53.8 1.0
CG2 B:ILE243 4.5 60.2 1.0
CA B:ILE243 4.6 67.5 1.0
CG C:ARG245 4.8 47.5 1.0
N D:MET198 4.8 54.7 1.0

Chlorine binding site 9 out of 22 in 7kb3

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Chlorine binding site 9 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:55.0
occ:0.97
 NH2 D:ARG245 3.1 48.5 1.0
OG B:SER197 3.2 48.8 1.0
N B:SER197 3.3 53.2 1.0
NH1 D:ARG245 3.4 52.6 1.0
CZ D:ARG245 3.7 52.0 1.0
CB B:SER197 3.8 53.6 1.0
CD1 D:ILE243 3.9 67.9 1.0
CD A:ARG245 4.0 45.3 1.0
O A:HOH402 4.0 56.4 1.0
N A:GLY246 4.0 56.1 1.0
CA B:ALA196 4.1 56.2 1.0
CB B:ALA196 4.1 46.4 1.0
CA B:SER197 4.2 55.5 1.0
CA A:ARG245 4.2 53.0 1.0
C B:ALA196 4.2 54.1 1.0
CG2 D:ILE243 4.4 61.2 1.0
CB A:ARG245 4.5 43.9 1.0
C A:ARG245 4.5 50.6 1.0
CG C:PRO41 4.8 58.6 1.0
O D:PHE242 4.8 91.8 1.0
CA D:ILE243 4.8 68.7 1.0
CG A:ARG245 4.9 44.4 1.0
N B:MET198 4.9 54.0 1.0
O A:GLN244 5.0 63.1 1.0

Chlorine binding site 10 out of 22 in 7kb3

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Chlorine binding site 10 out of 22 in the The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl306

b:92.4
occ:0.90
 O B:THR240 3.0 96.4 1.0
O B:ASP238 3.3 0.2 1.0
OG D:SER194 3.7 63.9 1.0
O B:HOH404 3.9 66.6 1.0
CB D:ASN190 3.9 60.9 1.0
O B:ALA237 4.0 96.1 1.0
C B:ASP238 4.0 0.8 1.0
ND2 D:ASN190 4.0 65.5 1.0
CD1 B:PHE242 4.1 80.0 1.0
C B:THR240 4.1 91.5 1.0
CG D:ASN190 4.2 70.0 1.0
CE1 B:PHE242 4.4 82.2 1.0
O D:ASN190 4.6 53.5 1.0
CA B:ASP238 4.6 0.8 1.0
N B:THR240 4.6 99.2 1.0
C B:ASN239 4.7 95.5 1.0
CA D:ASN190 4.8 53.5 1.0
N B:ASN239 4.8 0.9 1.0
C D:ASN190 4.9 53.8 1.0
CA B:THR240 4.9 98.0 1.0
CA B:ASN239 5.0 0.1 1.0

Reference:

K.Tan, R.Wu, R.Jedrzejczak, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). The Structure of A Sensor Domain of A Histidine Kinase (Vxra) From Vibrio Cholerae O1 Biovar Eltor Str. N16961, 2ND Form To Be Published.
Page generated: Sun Dec 13 10:32:30 2020

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