Chlorine in PDB 7kez: Crystal Structure of BH1 Fab Variant (Cdr H3 Loop Design 16_0325) in Complex with Vegf

Protein crystallography data

The structure of Crystal Structure of BH1 Fab Variant (Cdr H3 Loop Design 16_0325) in Complex with Vegf, PDB code: 7kez was solved by R.Shi, M.S.Manenda, M.-E.Picard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 96.92 / 2.31
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 100.799, 193.839, 76.379, 90, 90, 90
R / Rfree (%) 17.8 / 23.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of BH1 Fab Variant (Cdr H3 Loop Design 16_0325) in Complex with Vegf (pdb code 7kez). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of BH1 Fab Variant (Cdr H3 Loop Design 16_0325) in Complex with Vegf, PDB code: 7kez:

Chlorine binding site 1 out of 1 in 7kez

Go back to Chlorine Binding Sites List in 7kez
Chlorine binding site 1 out of 1 in the Crystal Structure of BH1 Fab Variant (Cdr H3 Loop Design 16_0325) in Complex with Vegf


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of BH1 Fab Variant (Cdr H3 Loop Design 16_0325) in Complex with Vegf within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl300

b:46.6
occ:1.00
O H:HOH506 3.1 50.2 1.0
N H:TYR59 3.4 32.9 1.0
NE H:ARG58 3.6 43.6 1.0
NZ H:LYS64 3.6 72.8 1.0
CA H:ARG58 3.6 35.8 1.0
O H:HOH483 3.8 57.8 1.0
CD H:ARG58 3.9 43.4 1.0
CE H:LYS64 3.9 71.8 1.0
C H:ARG58 4.0 33.4 1.0
O H:TYR59 4.0 37.5 1.0
CD2 H:TYR59 4.0 32.0 1.0
CB H:TYR59 4.2 36.5 1.0
CA H:TYR59 4.3 39.5 1.0
CB H:ARG58 4.3 36.0 1.0
CD H:LYS64 4.3 59.7 1.0
O H:THR57 4.4 37.9 1.0
C H:TYR59 4.6 34.7 1.0
CG H:TYR59 4.6 32.8 1.0
N H:ARG58 4.7 36.6 1.0
CZ H:ARG58 4.7 44.7 1.0
CG H:ARG58 4.7 39.6 1.0
CG H:LYS64 4.8 55.0 1.0
NH2 H:ARG58 4.9 50.0 1.0
O H:HOH414 4.9 43.9 1.0
C H:THR57 4.9 36.4 1.0

Reference:

M.-E.Picard, M.S.Manenda, C.Corbeil, T.Sulea, J.Baardsness, H.Hogues, F.Gaudreault, C.Deprez, E.O.Purisima, R.Shi. Crystal Structure of BH1 Fab Cdr H3 Loop Variants in Apo Form and in Complex with Vegf To Be Published.
Page generated: Mon Jul 29 23:31:46 2024

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