Chlorine in PDB 7kil: Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc

Protein crystallography data

The structure of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc, PDB code: 7kil was solved by W.Gu, M.V.Airola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.24 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.284, 58.554, 42.897, 90, 100.06, 90
R / Rfree (%) 22.2 / 25.6

Other elements in 7kil:

The structure of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc (pdb code 7kil). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc, PDB code: 7kil:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 7kil

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Chlorine binding site 1 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:27.4
occ:1.00
 ZN A:ZN601 2.0 37.5 1.0
HD22 A:ASN505 2.1 31.5 1.0
HB2 A:ASN505 2.8 31.6 1.0
ND2 A:ASN505 2.9 26.2 1.0
HB3 A:LEU469 3.0 23.2 1.0
OD2 A:ASP503 3.3 23.2 1.0
CL A:CL608 3.3 32.5 1.0
OD1 A:ASP503 3.4 23.4 1.0
HD21 A:ASN505 3.5 31.5 1.0
CL A:CL607 3.5 26.4 1.0
CB A:ASN505 3.5 26.3 1.0
HD13 A:LEU469 3.6 28.4 1.0
HD22 A:LEU469 3.6 26.3 1.0
CG A:ASN505 3.7 28.1 1.0
CG A:ASP503 3.7 23.9 1.0
HB3 A:ASN505 3.8 31.6 1.0
CB A:LEU469 3.9 19.3 1.0
O A:LEU469 4.0 24.0 1.0
HB2 A:LEU469 4.3 23.2 1.0
CD1 A:LEU469 4.4 23.6 1.0
H A:ASN505 4.4 26.7 1.0
CD2 A:LEU469 4.4 21.9 1.0
CG A:LEU469 4.5 18.3 1.0
CA A:ASN505 4.8 21.5 1.0
HE22 A:GLN487 4.8 52.9 1.0
HD12 A:LEU469 4.8 28.4 1.0
HA A:LEU469 4.9 20.9 1.0
CA A:LEU469 4.9 17.4 1.0
OD1 A:ASN505 4.9 28.5 1.0
C A:LEU469 4.9 18.4 1.0
HD2 A:PRO504 4.9 29.6 1.0
N A:ASN505 5.0 22.2 1.0

Chlorine binding site 2 out of 11 in 7kil

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Chlorine binding site 2 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl607

b:26.4
occ:1.00
 ZN A:ZN601 2.3 37.5 1.0
HD2 A:PRO504 2.8 29.6 1.0
HD22 A:ASN505 3.0 31.5 1.0
OD2 A:ASP503 3.0 23.2 1.0
OD1 A:ASP503 3.4 23.4 1.0
CL A:CL606 3.5 27.4 1.0
ND2 A:ASN505 3.5 26.2 1.0
HD21 A:ASN505 3.5 31.5 1.0
CG A:ASP503 3.5 23.9 1.0
CD A:PRO504 3.7 24.6 1.0
CL A:CL608 3.7 32.5 1.0
HG2 A:PRO504 3.8 36.6 1.0
O A:HOH803 3.8 43.0 1.0
HD3 A:PRO504 4.0 29.6 1.0
O A:HOH774 4.2 39.6 1.0
CG A:PRO504 4.3 30.5 1.0
H A:ASN505 4.4 26.7 1.0
HB2 A:ASN505 4.5 31.6 1.0
CG A:ASN505 4.6 28.1 1.0
HA A:ASP503 4.7 22.7 1.0
N A:PRO504 4.7 26.6 1.0
CB A:ASP503 4.8 19.6 1.0
HB2 A:PRO504 5.0 38.2 1.0
HG3 A:PRO504 5.0 36.6 1.0

Chlorine binding site 3 out of 11 in 7kil

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Chlorine binding site 3 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl608

b:32.5
occ:1.00
 ZN A:ZN601 2.0 37.5 1.0
OD2 A:ASP503 3.1 23.2 1.0
O A:HOH763 3.1 34.0 1.0
CL A:CL606 3.3 27.4 1.0
HD13 A:LEU469 3.7 28.4 1.0
CL A:CL607 3.7 26.4 1.0
CG A:ASP503 4.3 23.9 1.0
CD1 A:LEU469 4.6 23.6 1.0
O A:HOH756 4.8 39.5 1.0
HD11 A:LEU469 4.8 28.4 1.0
HD22 A:ASN505 4.9 31.5 1.0
OD1 A:ASP503 4.9 23.4 1.0
HD22 A:LEU469 5.0 26.3 1.0
HD12 A:LEU469 5.0 28.4 1.0

Chlorine binding site 4 out of 11 in 7kil

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Chlorine binding site 4 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl609

b:63.9
occ:1.00
 HH21 A:ARG477 2.4 59.0 1.0
HH22 A:ARG477 2.7 59.0 1.0
NH2 A:ARG477 2.9 49.1 1.0
O A:CYS470 2.9 28.0 1.0
O A:HOH716 2.9 45.8 1.0
HA3 A:GLY471 3.3 31.7 1.0
C A:CYS470 3.9 26.6 1.0
H A:GLY472 4.0 30.7 1.0
CA A:GLY471 4.0 26.4 1.0
N A:GLY472 4.0 25.5 1.0
C A:GLY471 4.1 27.3 1.0
CZ A:ARG477 4.2 46.7 1.0
O A:HOH768 4.3 32.7 1.0
HA2 A:GLY472 4.4 35.5 1.0
N A:GLY471 4.4 22.0 1.0
HE A:ARG477 4.5 53.1 1.0
OD1 A:ASN505 4.6 28.5 1.0
CA A:GLY472 4.7 29.6 1.0
O A:HOH730 4.7 36.8 1.0
O A:GLY471 4.7 20.3 1.0
HA3 A:GLY472 4.7 35.5 1.0
HA2 A:GLY471 4.8 31.7 1.0
O A:HOH723 4.8 38.6 1.0
NE A:ARG477 4.8 44.2 1.0
O A:HOH749 4.9 41.9 1.0
HA A:CYS470 5.0 27.1 1.0
HB3 A:ASN505 5.0 31.6 1.0

Chlorine binding site 5 out of 11 in 7kil

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Chlorine binding site 5 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl610

b:41.1
occ:1.00
 ZN A:ZN605 2.1 64.3 1.0
O A:HOH800 2.8 38.1 1.0
NE2 A:HIS476 3.2 48.6 1.0
OXT A:PRO548 3.3 37.5 1.0
CL A:CL611 3.4 57.4 1.0
HD2 A:HIS476 3.7 44.0 1.0
CD2 A:HIS476 3.8 36.6 1.0
CE1 A:HIS476 4.3 44.6 1.0
O A:SER474 4.4 28.1 1.0
O A:HOH806 4.4 42.0 1.0
C A:PRO548 4.5 33.0 1.0
HE1 A:HIS476 4.5 53.5 1.0
O A:HOH810 4.6 47.9 1.0

Chlorine binding site 6 out of 11 in 7kil

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Chlorine binding site 6 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl611

b:57.4
occ:1.00
 ZN A:ZN605 1.8 64.3 1.0
HE1 A:HIS476 2.9 53.5 1.0
OXT A:PRO548 3.1 37.5 1.0
NE2 A:HIS476 3.2 48.6 1.0
CE1 A:HIS476 3.3 44.6 1.0
CL A:CL610 3.4 41.1 1.0
O A:PRO548 3.5 28.5 1.0
C A:PRO548 3.7 33.0 1.0
CD2 A:HIS476 4.5 36.6 1.0
O A:HOH800 4.5 38.1 1.0
ND1 A:HIS476 4.6 42.8 1.0
HD2 A:HIS476 4.9 44.0 1.0

Chlorine binding site 7 out of 11 in 7kil

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Chlorine binding site 7 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl604

b:24.2
occ:1.00
 HD22 B:ASN505 1.9 24.2 1.0
ZN B:ZN601 2.2 40.5 1.0
ND2 B:ASN505 2.7 20.1 1.0
HB2 B:ASN505 2.9 22.3 1.0
HD21 B:ASN505 3.2 24.2 1.0
HB3 B:LEU469 3.3 22.7 1.0
OD1 B:ASP503 3.4 17.7 1.0
OD2 B:ASP503 3.4 24.5 1.0
HD22 B:LEU469 3.5 23.9 1.0
CB B:ASN505 3.6 18.6 1.0
CG B:ASN505 3.6 26.5 1.0
CG B:ASP503 3.7 20.1 1.0
HD13 B:LEU469 3.8 32.4 1.0
HB3 B:ASN505 3.9 22.3 1.0
CB B:LEU469 4.2 18.9 1.0
O B:LEU469 4.2 20.8 1.0
CD2 B:LEU469 4.4 19.9 1.0
H B:ASN505 4.5 20.6 1.0
HB2 B:LEU469 4.6 22.7 1.0
O B:HOH743 4.6 31.2 1.0
CG B:LEU469 4.7 20.6 1.0
CD1 B:LEU469 4.7 26.9 1.0
OD1 B:ASN505 4.8 25.8 1.0
HD23 B:LEU469 4.9 23.9 1.0
CA B:ASN505 4.9 17.6 1.0
HD21 B:LEU469 4.9 23.9 1.0

Chlorine binding site 8 out of 11 in 7kil

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Chlorine binding site 8 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl605

b:28.0
occ:1.00
 ZN B:ZN602 2.2 43.7 1.0
HB3 B:ASP545 3.2 33.0 1.0
OD2 B:ASP545 3.2 27.3 1.0
HB2 A:ALA499 3.5 28.5 1.0
CL B:CL606 3.6 27.9 1.0
HE2 B:LYS546 3.6 44.7 1.0
CG B:ASP545 3.7 24.8 1.0
CB B:ASP545 3.8 27.4 1.0
HB2 B:ASP545 4.1 33.0 1.0
O B:HOH726 4.1 16.6 1.0
HZ3 B:LYS546 4.1 70.4 1.0
CE B:LYS546 4.5 37.2 1.0
HD3 B:LYS546 4.5 35.7 1.0
CB A:ALA499 4.5 23.7 1.0
NZ B:LYS546 4.6 58.6 1.0
HZ1 B:LYS546 4.6 70.4 1.0
OD1 B:ASP545 4.7 26.5 1.0
HB1 A:ALA499 4.7 28.5 1.0
O B:HOH741 4.7 31.2 1.0
HB3 A:ALA499 4.9 28.5 1.0
CD B:LYS546 5.0 29.7 1.0

Chlorine binding site 9 out of 11 in 7kil

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Chlorine binding site 9 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl606

b:27.9
occ:1.00
 ZN B:ZN602 2.2 43.7 1.0
HE2 B:LYS546 2.8 44.7 1.0
O B:HOH741 3.1 31.2 1.0
HA B:ILE542 3.1 25.9 1.0
HG12 B:ILE542 3.1 22.4 1.0
HG2 B:LYS546 3.2 38.2 1.0
HB2 B:ASP545 3.2 33.0 1.0
O A:HOH738 3.5 23.2 1.0
HB2 A:PRO498 3.5 21.3 1.0
HG23 B:ILE542 3.5 25.4 1.0
CL B:CL605 3.6 28.0 1.0
OD2 B:ASP545 3.6 27.3 1.0
CE B:LYS546 3.7 37.2 1.0
HG3 B:LYS546 3.8 38.2 1.0
HB3 B:ASP545 3.8 33.0 1.0
CG B:LYS546 3.9 31.8 1.0
HE3 B:LYS546 3.9 44.7 1.0
CB B:ASP545 3.9 27.4 1.0
CG1 B:ILE542 3.9 18.6 1.0
HG2 A:PRO498 4.0 23.3 1.0
CA B:ILE542 4.0 21.5 1.0
HG13 B:ILE542 4.2 22.4 1.0
CD B:LYS546 4.2 29.7 1.0
HD3 B:LYS546 4.2 35.7 1.0
CG B:ASP545 4.3 24.8 1.0
HB2 A:ALA499 4.3 28.5 1.0
CB B:ILE542 4.3 18.3 1.0
CG2 B:ILE542 4.3 21.1 1.0
CB A:PRO498 4.4 17.7 1.0
HD2 A:PRO498 4.5 20.2 1.0
HA A:ALA499 4.5 21.5 1.0
H A:ALA499 4.6 21.5 1.0
N A:ALA499 4.6 17.9 1.0
CG A:PRO498 4.6 19.4 1.0
O B:ILE542 4.7 19.8 1.0
HG21 B:ILE542 4.7 25.4 1.0
N B:ILE542 4.8 20.2 1.0
C A:PRO498 4.8 14.6 1.0
NZ B:LYS546 4.8 58.6 1.0
HG3 B:PRO522 4.8 22.7 1.0
O B:SER541 4.8 19.6 1.0
C B:ILE542 4.9 21.8 1.0
HZ1 B:LYS546 4.9 70.4 1.0
HZ3 B:LYS546 4.9 70.4 1.0
CA A:ALA499 5.0 17.9 1.0
HB3 A:PRO498 5.0 21.3 1.0

Chlorine binding site 10 out of 11 in 7kil

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Chlorine binding site 10 out of 11 in the Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of the Mouse Lipin-1 M-Lip Domain with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl607

b:32.8
occ:1.00
 ZN B:ZN603 2.5 70.5 1.0
HZ2 B:LYS536 2.7 70.9 1.0
HD2 B:LYS536 3.1 71.1 1.0
OE1 B:GLU540 3.5 51.1 1.0
NZ B:LYS536 3.5 59.1 1.0
HE3 B:LYS536 3.6 67.6 1.0
CL B:CL608 3.6 56.3 1.0
CE B:LYS536 3.8 56.3 1.0
CD B:LYS536 3.9 59.2 1.0
HZ1 B:LYS536 3.9 70.9 1.0
O B:HOH783 3.9 46.2 1.0
HZ3 B:LYS536 4.1 70.9 1.0
O B:HOH705 4.1 41.5 1.0
HG2 B:LYS536 4.4 60.1 1.0
HD3 B:LYS536 4.6 71.1 1.0
CD B:GLU540 4.7 40.1 1.0
CG B:LYS536 4.7 50.1 1.0
HE2 B:LYS536 4.8 67.6 1.0
O B:HOH791 4.9 45.1 1.0
HG3 B:LYS536 4.9 60.1 1.0

Reference:

W.Gu, M.V.Airola. The Middle Lipin (M-Lip) Domain Is A New Protein Fold That Dimerizes and Binds Membranes To Be Published.
Page generated: Mon Jul 29 23:34:34 2024

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