Chlorine in PDB 7kki: Crystal Structure of the Marr Family Transcriptional Regulator From Variovorax Paradoxus Bound to 2,4-Dichlorophenoxyacetic Acid

Protein crystallography data

The structure of Crystal Structure of the Marr Family Transcriptional Regulator From Variovorax Paradoxus Bound to 2,4-Dichlorophenoxyacetic Acid, PDB code: 7kki was solved by W.G.Walton, M.R.Redinbo, J.L.Dangl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.96 / 1.60
Space group F 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 54.411, 115.761, 115.945, 90, 90, 90
R / Rfree (%) 18.3 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Marr Family Transcriptional Regulator From Variovorax Paradoxus Bound to 2,4-Dichlorophenoxyacetic Acid (pdb code 7kki). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Marr Family Transcriptional Regulator From Variovorax Paradoxus Bound to 2,4-Dichlorophenoxyacetic Acid, PDB code: 7kki:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7kki

Go back to Chlorine Binding Sites List in 7kki
Chlorine binding site 1 out of 2 in the Crystal Structure of the Marr Family Transcriptional Regulator From Variovorax Paradoxus Bound to 2,4-Dichlorophenoxyacetic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Marr Family Transcriptional Regulator From Variovorax Paradoxus Bound to 2,4-Dichlorophenoxyacetic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:35.9
occ:0.90
CL3 A:CFA203 0.0 35.9 0.9
C2' A:CFA203 1.8 18.9 0.9
C1' A:CFA203 2.7 21.1 0.9
O1' A:CFA203 2.8 24.1 0.9
C3' A:CFA203 2.8 21.8 0.9
H3' A:CFA203 3.0 26.1 0.9
O A:VAL65 3.4 23.8 0.2
CG2 A:VAL67 3.4 23.8 0.1
CG2 A:VAL67 3.4 25.4 0.8
O A:VAL65 3.5 26.1 0.8
NE A:ARG46 3.8 22.2 1.0
C A:THR66 3.8 24.5 1.0
O A:THR66 3.8 24.9 1.0
CD A:ARG46 3.8 23.5 1.0
CZ A:ARG46 3.9 23.3 1.0
NH1 A:ARG46 4.0 25.7 1.0
CA A:THR66 4.0 23.0 1.0
C6' A:CFA203 4.0 20.5 0.9
C4' A:CFA203 4.0 21.7 0.9
C2 A:CFA203 4.1 24.1 0.9
CB A:VAL67 4.2 26.0 0.8
N A:VAL67 4.3 24.3 0.1
N A:VAL67 4.3 24.1 0.8
C A:VAL65 4.4 23.5 0.2
H2C1 A:CFA203 4.4 29.0 0.9
CG A:ARG46 4.4 20.8 1.0
C A:VAL65 4.4 23.6 0.8
CB A:VAL67 4.5 26.2 0.1
H2C2 A:CFA203 4.5 29.0 0.9
CG1 A:VAL67 4.5 26.9 0.1
NH2 A:ARG46 4.5 25.5 1.0
C5' A:CFA203 4.5 21.3 0.9
H6' A:CFA203 4.7 24.6 0.9
N A:THR66 4.7 23.2 1.0
CA A:VAL67 4.9 23.9 0.8
CA A:VAL67 5.0 24.0 0.1

Chlorine binding site 2 out of 2 in 7kki

Go back to Chlorine Binding Sites List in 7kki
Chlorine binding site 2 out of 2 in the Crystal Structure of the Marr Family Transcriptional Regulator From Variovorax Paradoxus Bound to 2,4-Dichlorophenoxyacetic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Marr Family Transcriptional Regulator From Variovorax Paradoxus Bound to 2,4-Dichlorophenoxyacetic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:30.2
occ:0.90
CL4 A:CFA203 0.0 30.2 0.9
C4' A:CFA203 1.8 21.7 0.9
C5' A:CFA203 2.7 21.3 0.9
H5' A:CFA203 2.7 25.5 0.9
C3' A:CFA203 2.7 21.8 0.9
H3' A:CFA203 2.9 26.1 0.9
OG A:SER50 3.0 18.0 0.3
N A:SER50 3.5 22.0 0.3
N A:SER50 3.5 22.0 0.7
CB A:ALA49 3.6 21.8 1.0
O A:ARG46 3.6 22.0 1.0
C A:ALA49 3.8 23.4 1.0
CB A:SER50 3.8 25.6 0.7
CA A:SER50 3.9 22.2 0.7
CA A:SER50 3.9 22.4 0.3
C6' A:CFA203 3.9 20.5 0.9
C2' A:CFA203 4.0 18.9 0.9
CB A:SER50 4.0 23.8 0.3
CA A:ARG46 4.2 19.3 1.0
CA A:ALA49 4.3 21.7 1.0
O A:ALA49 4.3 27.2 1.0
C A:ARG46 4.3 20.7 1.0
C1' A:CFA203 4.5 21.1 0.9
H6' A:CFA203 4.7 24.6 0.9
O A:TRP45 4.8 21.4 1.0
CB A:ARG46 4.8 18.5 1.0
N A:ALA49 4.9 20.7 1.0
OG A:SER50 5.0 28.2 0.7

Reference:

J.M.Conway, I.Salas-Gonzalez, W.G.Walton, M.R.Redinbo, J.L.Dangl. Structural Basis For Auxin Recognition By Plant Commensal Bacteria To Be Published.
Page generated: Mon Jul 29 23:36:46 2024

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