Chlorine in PDB 7km5: Crystal Structure of Sars-Cov-2 Rbd Complexed with Nanosota-1

The structure of Crystal Structure of Sars-Cov-2 Rbd Complexed with Nanosota-1, PDB code: 7km5 was solved by G.Ye, K.Shi, H.Aihara, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.89 / 3.19
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.849, 60.849, 410.701, 90, 90, 90
R / Rfree (%)	24.7 / 29.4

The binding sites of Chlorine atom in the Crystal Structure of Sars-Cov-2 Rbd Complexed with Nanosota-1 (pdb code 7km5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Sars-Cov-2 Rbd Complexed with Nanosota-1, PDB code: 7km5:

Chlorine binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 Rbd Complexed with Nanosota-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sars-Cov-2 Rbd Complexed with Nanosota-1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:75.9 occ:1.00 NZ B:LYS378 3.1 79.1 1.0 CA D:GLY16 3.5 98.0 1.0 CG2 D:VAL12 3.6 78.8 1.0 CE B:LYS378 3.7 75.5 1.0 NH1 B:ARG408 3.9 85.3 1.0 CG2 B:THR376 3.9 70.4 1.0 OG1 B:THR376 4.0 74.1 1.0 N D:SER17 4.0 84.3 1.0 CD B:ARG408 4.1 89.6 1.0 CD B:LYS378 4.2 51.6 1.0 C D:GLY16 4.3 86.3 1.0 CG1 D:VAL12 4.3 81.8 1.0 CA B:ARG408 4.3 95.4 1.0 O B:VAL407 4.4 78.2 1.0 CB D:VAL12 4.4 82.8 1.0 N D:GLY16 4.5 83.3 1.0 CG1 B:VAL407 4.6 53.2 1.0 CB B:THR376 4.6 66.9 1.0 O D:SER17 4.7 82.4 1.0 C B:VAL407 4.7 83.7 1.0 N B:ARG408 4.7 92.9 1.0 N D:GLN13 4.7 76.7 1.0 CA D:VAL12 4.8 72.5 1.0 CZ B:ARG408 4.9 90.4 1.0 CB B:ARG408 4.9 81.1 1.0

G.Ye, K.Shi, H.Aihara, F.Li. Crystal Structure of Rbd and Nanobody Complex To Be Published.