Chlorine in PDB 7kp6: Structure of ACK1 Kinase in Complex with A Selective Inhibitor
Enzymatic activity of Structure of ACK1 Kinase in Complex with A Selective Inhibitor
All present enzymatic activity of Structure of ACK1 Kinase in Complex with A Selective Inhibitor:
2.7.10.2;
2.7.11.1;
Protein crystallography data
The structure of Structure of ACK1 Kinase in Complex with A Selective Inhibitor, PDB code: 7kp6
was solved by
M.K.Thakur,
W.T.Miller,
N.Mahajan,
M.A.Seeliger,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.56 /
1.79
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.016,
42.819,
92.623,
90,
99.65,
90
|
R / Rfree (%)
|
17.8 /
20.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of ACK1 Kinase in Complex with A Selective Inhibitor
(pdb code 7kp6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of ACK1 Kinase in Complex with A Selective Inhibitor, PDB code: 7kp6:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7kp6
Go back to
Chlorine Binding Sites List in 7kp6
Chlorine binding site 1 out
of 4 in the Structure of ACK1 Kinase in Complex with A Selective Inhibitor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of ACK1 Kinase in Complex with A Selective Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:19.8
occ:1.00
|
CL5
|
A:WTP401
|
0.0
|
19.8
|
1.0
|
C5
|
A:WTP401
|
1.7
|
17.9
|
1.0
|
HAD
|
A:WTP401
|
2.5
|
28.3
|
1.0
|
C6
|
A:WTP401
|
2.7
|
17.2
|
1.0
|
C4
|
A:WTP401
|
2.7
|
19.4
|
1.0
|
HE2
|
A:LYS158
|
2.8
|
38.2
|
1.0
|
H6
|
A:WTP401
|
2.8
|
20.7
|
1.0
|
HE3
|
A:LYS158
|
2.9
|
38.2
|
1.0
|
HG1
|
A:THR205
|
2.9
|
23.0
|
1.0
|
NAD
|
A:WTP401
|
2.9
|
23.5
|
1.0
|
HG21
|
A:ILE190
|
3.1
|
23.3
|
1.0
|
HZ1
|
A:LYS158
|
3.2
|
44.1
|
1.0
|
CE
|
A:LYS158
|
3.2
|
31.9
|
1.0
|
HD11
|
A:LEU259
|
3.5
|
23.9
|
1.0
|
O
|
A:HOH598
|
3.5
|
35.6
|
1.0
|
HB3
|
A:ALA156
|
3.5
|
26.2
|
1.0
|
OG1
|
A:THR205
|
3.6
|
19.2
|
1.0
|
NZ
|
A:LYS158
|
3.7
|
36.8
|
1.0
|
HG13
|
A:ILE190
|
3.7
|
23.8
|
1.0
|
HB1
|
A:ALA156
|
3.8
|
26.2
|
1.0
|
O
|
A:GLY269
|
3.8
|
23.8
|
1.0
|
HG11
|
A:VAL140
|
4.0
|
27.9
|
1.0
|
N1
|
A:WTP401
|
4.0
|
18.9
|
1.0
|
HD13
|
A:LEU259
|
4.0
|
23.9
|
1.0
|
N3
|
A:WTP401
|
4.0
|
17.8
|
1.0
|
CB
|
A:ALA156
|
4.0
|
21.9
|
1.0
|
CD1
|
A:LEU259
|
4.0
|
19.9
|
1.0
|
CG2
|
A:ILE190
|
4.1
|
19.4
|
1.0
|
HD12
|
A:LEU259
|
4.1
|
23.9
|
1.0
|
HB2
|
A:ALA156
|
4.1
|
26.2
|
1.0
|
HZ3
|
A:LYS158
|
4.3
|
44.1
|
1.0
|
HD12
|
A:ILE190
|
4.3
|
27.2
|
1.0
|
HZ2
|
A:LYS158
|
4.3
|
44.1
|
1.0
|
HG23
|
A:ILE190
|
4.3
|
23.3
|
1.0
|
CAE
|
A:WTP401
|
4.3
|
31.9
|
1.0
|
O
|
A:GLU206
|
4.4
|
19.1
|
1.0
|
C2
|
A:WTP401
|
4.5
|
18.7
|
1.0
|
HG2
|
A:LYS158
|
4.5
|
45.8
|
1.0
|
HAE
|
A:WTP401
|
4.5
|
38.3
|
1.0
|
CG1
|
A:ILE190
|
4.5
|
19.8
|
1.0
|
CD
|
A:LYS158
|
4.6
|
34.1
|
1.0
|
HG21
|
A:THR205
|
4.6
|
26.6
|
1.0
|
HAF
|
A:WTP401
|
4.6
|
38.3
|
1.0
|
HG22
|
A:ILE190
|
4.6
|
23.3
|
1.0
|
HA3
|
A:GLY269
|
4.7
|
32.3
|
1.0
|
HG3
|
A:LYS158
|
4.7
|
45.8
|
1.0
|
HA2
|
A:GLY269
|
4.7
|
32.3
|
1.0
|
CB
|
A:THR205
|
4.8
|
20.0
|
1.0
|
HG13
|
A:VAL140
|
4.8
|
27.9
|
1.0
|
CB
|
A:ILE190
|
4.8
|
18.1
|
1.0
|
CG1
|
A:VAL140
|
4.8
|
23.3
|
1.0
|
HB
|
A:THR205
|
4.8
|
24.1
|
1.0
|
CD1
|
A:ILE190
|
4.8
|
22.7
|
1.0
|
HAL
|
A:WTP401
|
4.8
|
55.7
|
1.0
|
C
|
A:GLY269
|
4.8
|
26.1
|
1.0
|
CG
|
A:LYS158
|
4.9
|
38.1
|
1.0
|
HB
|
A:ILE190
|
4.9
|
21.7
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7kp6
Go back to
Chlorine Binding Sites List in 7kp6
Chlorine binding site 2 out
of 4 in the Structure of ACK1 Kinase in Complex with A Selective Inhibitor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of ACK1 Kinase in Complex with A Selective Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:17.8
occ:1.00
|
HH12
|
A:ARG263
|
2.5
|
23.8
|
1.0
|
HH22
|
A:ARG263
|
2.5
|
28.9
|
1.0
|
HH11
|
A:ARG216
|
2.6
|
22.8
|
1.0
|
HD3
|
A:ARG216
|
2.8
|
19.5
|
1.0
|
O
|
A:HOH630
|
2.9
|
34.1
|
1.0
|
HB3
|
A:ARG216
|
3.0
|
17.3
|
1.0
|
HD2
|
A:HIS220
|
3.1
|
26.4
|
1.0
|
NH1
|
A:ARG263
|
3.2
|
19.8
|
1.0
|
NH2
|
A:ARG263
|
3.3
|
24.0
|
1.0
|
HE2
|
A:PHE224
|
3.3
|
20.6
|
1.0
|
HZ
|
A:PHE224
|
3.3
|
20.4
|
1.0
|
NH1
|
A:ARG216
|
3.3
|
19.0
|
1.0
|
HB2
|
A:HIS220
|
3.3
|
22.1
|
1.0
|
HG2
|
A:ARG216
|
3.6
|
20.5
|
1.0
|
CD2
|
A:HIS220
|
3.6
|
22.0
|
1.0
|
CD
|
A:ARG216
|
3.7
|
16.2
|
1.0
|
ND1
|
A:HIS223
|
3.7
|
21.7
|
1.0
|
HH12
|
A:ARG216
|
3.7
|
22.8
|
1.0
|
CZ
|
A:ARG263
|
3.7
|
22.3
|
1.0
|
CB
|
A:ARG216
|
3.9
|
14.4
|
1.0
|
CE2
|
A:PHE224
|
3.9
|
17.1
|
1.0
|
CZ
|
A:PHE224
|
3.9
|
17.0
|
1.0
|
CG
|
A:ARG216
|
3.9
|
17.1
|
1.0
|
HB2
|
A:HIS223
|
3.9
|
17.1
|
1.0
|
HH11
|
A:ARG263
|
3.9
|
23.8
|
1.0
|
HH21
|
A:ARG263
|
4.0
|
28.9
|
1.0
|
CG
|
A:HIS220
|
4.0
|
21.3
|
1.0
|
CB
|
A:HIS220
|
4.0
|
18.4
|
1.0
|
HB3
|
A:HIS223
|
4.1
|
17.1
|
1.0
|
HB3
|
A:HIS220
|
4.2
|
22.1
|
1.0
|
HD2
|
A:ARG216
|
4.3
|
19.5
|
1.0
|
CZ
|
A:ARG216
|
4.3
|
19.4
|
1.0
|
CB
|
A:HIS223
|
4.3
|
14.2
|
1.0
|
CG
|
A:HIS223
|
4.4
|
20.3
|
1.0
|
NE
|
A:ARG216
|
4.4
|
18.0
|
1.0
|
HA
|
A:ARG216
|
4.5
|
18.5
|
1.0
|
HB2
|
A:ARG216
|
4.5
|
17.3
|
1.0
|
NE2
|
A:HIS220
|
4.6
|
23.1
|
1.0
|
CE1
|
A:HIS223
|
4.6
|
22.5
|
1.0
|
HE1
|
A:HIS223
|
4.7
|
27.0
|
1.0
|
CA
|
A:ARG216
|
4.7
|
15.4
|
1.0
|
HG3
|
A:ARG216
|
4.8
|
20.5
|
1.0
|
HE2
|
A:HIS220
|
4.9
|
27.7
|
1.0
|
O
|
A:ARG216
|
4.9
|
15.7
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7kp6
Go back to
Chlorine Binding Sites List in 7kp6
Chlorine binding site 3 out
of 4 in the Structure of ACK1 Kinase in Complex with A Selective Inhibitor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of ACK1 Kinase in Complex with A Selective Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl403
b:23.6
occ:1.00
|
H
|
A:GLN287
|
2.3
|
30.0
|
1.0
|
HH12
|
A:ARG251
|
2.4
|
24.7
|
1.0
|
HH22
|
A:ARG251
|
2.6
|
24.0
|
1.0
|
HD2
|
A:ARG290
|
2.8
|
49.3
|
1.0
|
HG3
|
A:GLN287
|
2.9
|
50.4
|
1.0
|
HA
|
A:MET286
|
2.9
|
25.0
|
1.0
|
HE
|
A:ARG290
|
2.9
|
57.8
|
1.0
|
HE1
|
A:TYR284
|
3.1
|
51.0
|
1.0
|
N
|
A:GLN287
|
3.2
|
25.0
|
1.0
|
NH1
|
A:ARG251
|
3.2
|
20.6
|
1.0
|
HG3
|
A:MET286
|
3.2
|
23.7
|
1.0
|
NH2
|
A:ARG251
|
3.3
|
20.0
|
1.0
|
HB2
|
A:GLN287
|
3.4
|
40.3
|
1.0
|
NE
|
A:ARG290
|
3.4
|
48.2
|
1.0
|
CD
|
A:ARG290
|
3.5
|
41.1
|
1.0
|
HH21
|
A:ARG275
|
3.5
|
94.2
|
1.0
|
CG
|
A:GLN287
|
3.7
|
42.0
|
1.0
|
HE
|
A:ARG275
|
3.7
|
81.3
|
1.0
|
CZ
|
A:ARG251
|
3.7
|
20.6
|
1.0
|
CA
|
A:MET286
|
3.7
|
20.9
|
1.0
|
HH11
|
A:ARG251
|
3.8
|
24.7
|
1.0
|
CB
|
A:GLN287
|
3.8
|
33.6
|
1.0
|
OE1
|
A:GLN287
|
3.9
|
50.2
|
1.0
|
HD3
|
A:ARG290
|
3.9
|
49.3
|
1.0
|
CE1
|
A:TYR284
|
3.9
|
42.5
|
1.0
|
C
|
A:MET286
|
4.0
|
24.6
|
1.0
|
CG
|
A:MET286
|
4.0
|
19.7
|
1.0
|
HH21
|
A:ARG251
|
4.0
|
24.0
|
1.0
|
NH2
|
A:ARG275
|
4.1
|
78.5
|
1.0
|
CA
|
A:GLN287
|
4.1
|
28.2
|
1.0
|
CD
|
A:GLN287
|
4.2
|
49.5
|
1.0
|
HG2
|
A:MET286
|
4.2
|
23.7
|
1.0
|
NE
|
A:ARG275
|
4.2
|
67.7
|
1.0
|
O
|
A:VAL285
|
4.4
|
26.7
|
1.0
|
HG3
|
A:ARG275
|
4.4
|
51.9
|
1.0
|
CB
|
A:MET286
|
4.4
|
19.1
|
1.0
|
HG2
|
A:GLN287
|
4.5
|
50.4
|
1.0
|
CZ
|
A:ARG275
|
4.5
|
74.4
|
1.0
|
HD1
|
A:TYR284
|
4.6
|
49.4
|
1.0
|
CZ
|
A:ARG290
|
4.6
|
53.3
|
1.0
|
HH22
|
A:ARG275
|
4.6
|
94.2
|
1.0
|
OH
|
A:TYR284
|
4.6
|
46.5
|
1.0
|
HB2
|
A:MET286
|
4.7
|
22.9
|
1.0
|
HG3
|
A:ARG290
|
4.7
|
40.4
|
1.0
|
HA
|
A:GLN287
|
4.7
|
33.8
|
1.0
|
CG
|
A:ARG290
|
4.7
|
33.7
|
1.0
|
HH21
|
A:ARG290
|
4.7
|
69.0
|
1.0
|
CD1
|
A:TYR284
|
4.7
|
41.2
|
1.0
|
CZ
|
A:TYR284
|
4.7
|
45.6
|
1.0
|
HB3
|
A:GLN287
|
4.8
|
40.3
|
1.0
|
N
|
A:MET286
|
4.8
|
20.8
|
1.0
|
HB2
|
A:ARG290
|
4.9
|
36.0
|
1.0
|
HE2
|
A:MET286
|
4.9
|
25.6
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7kp6
Go back to
Chlorine Binding Sites List in 7kp6
Chlorine binding site 4 out
of 4 in the Structure of ACK1 Kinase in Complex with A Selective Inhibitor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of ACK1 Kinase in Complex with A Selective Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl401
b:20.7
occ:1.00
|
CL5
|
B:WTP401
|
0.0
|
20.7
|
1.0
|
C5
|
B:WTP401
|
1.7
|
18.3
|
1.0
|
HAD
|
B:WTP401
|
2.5
|
26.4
|
1.0
|
C6
|
B:WTP401
|
2.7
|
18.2
|
1.0
|
C4
|
B:WTP401
|
2.7
|
19.1
|
1.0
|
HG1
|
B:THR205
|
2.8
|
24.8
|
1.0
|
H6
|
B:WTP401
|
2.9
|
21.9
|
1.0
|
NAD
|
B:WTP401
|
2.9
|
21.9
|
1.0
|
HG21
|
B:ILE190
|
3.1
|
21.2
|
1.0
|
O
|
B:HOH615
|
3.3
|
29.0
|
1.0
|
O
|
B:HOH596
|
3.3
|
27.4
|
1.0
|
HB3
|
B:ALA156
|
3.4
|
28.4
|
1.0
|
O
|
B:GLY269
|
3.5
|
34.0
|
1.0
|
OG1
|
B:THR205
|
3.5
|
20.6
|
1.0
|
O
|
B:HOH558
|
3.6
|
31.4
|
1.0
|
O
|
B:HOH562
|
3.7
|
29.4
|
1.0
|
HB1
|
B:ALA156
|
3.7
|
28.4
|
1.0
|
HG11
|
B:VAL140
|
3.9
|
33.2
|
1.0
|
HD11
|
B:LEU259
|
3.9
|
31.6
|
1.0
|
HG13
|
B:ILE190
|
3.9
|
23.6
|
1.0
|
CB
|
B:ALA156
|
4.0
|
23.7
|
1.0
|
N3
|
B:WTP401
|
4.0
|
19.2
|
1.0
|
N1
|
B:WTP401
|
4.0
|
18.9
|
1.0
|
CG2
|
B:ILE190
|
4.1
|
17.7
|
1.0
|
HB2
|
B:ALA156
|
4.2
|
28.4
|
1.0
|
HAM
|
B:WTP401
|
4.3
|
45.9
|
1.0
|
HD12
|
B:LEU259
|
4.4
|
31.6
|
1.0
|
CAE
|
B:WTP401
|
4.4
|
26.1
|
1.0
|
HD13
|
B:LEU259
|
4.4
|
31.6
|
1.0
|
O
|
B:GLU206
|
4.4
|
20.4
|
1.0
|
HG23
|
B:ILE190
|
4.4
|
21.2
|
1.0
|
CD1
|
B:LEU259
|
4.4
|
26.3
|
1.0
|
HG21
|
B:THR205
|
4.5
|
26.3
|
1.0
|
HD12
|
B:ILE190
|
4.5
|
29.1
|
1.0
|
C2
|
B:WTP401
|
4.5
|
19.9
|
1.0
|
C
|
B:GLY269
|
4.6
|
30.3
|
1.0
|
HAE
|
B:WTP401
|
4.6
|
31.4
|
1.0
|
HG22
|
B:ILE190
|
4.6
|
21.2
|
1.0
|
CB
|
B:THR205
|
4.6
|
21.5
|
1.0
|
HG13
|
B:VAL140
|
4.7
|
33.2
|
1.0
|
CG1
|
B:ILE190
|
4.7
|
19.6
|
1.0
|
HA3
|
B:GLY269
|
4.7
|
31.1
|
1.0
|
CG1
|
B:VAL140
|
4.7
|
27.6
|
1.0
|
HA2
|
B:GLY269
|
4.7
|
31.1
|
1.0
|
HB
|
B:THR205
|
4.7
|
25.8
|
1.0
|
HAF
|
B:WTP401
|
4.8
|
31.4
|
1.0
|
CB
|
B:ILE190
|
4.8
|
17.1
|
1.0
|
HB
|
B:ILE190
|
4.9
|
20.5
|
1.0
|
HG21
|
B:VAL140
|
4.9
|
33.7
|
1.0
|
CA
|
B:GLY269
|
5.0
|
25.9
|
1.0
|
CG2
|
B:THR205
|
5.0
|
21.9
|
1.0
|
|
Reference:
M.K.Thakur,
W.T.Miller,
N.Mahajan,
M.A.Seeliger.
Structure of ACK1 Kinase in Complex with A Selective Inhibitor To Be Published.
Page generated: Mon Jul 29 23:41:24 2024
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