Chlorine in PDB 7kt5: Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN)

Enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN), PDB code: 7kt5 was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.93 / 1.46
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.996, 68.701, 110.125, 90, 90, 90
R / Rfree (%) 16.2 / 18.3

Other elements in 7kt5:

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN) also contains other interesting chemical elements:

Sodium (Na) 1 atom
Manganese (Mn) 7 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN) (pdb code 7kt5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN), PDB code: 7kt5:

Chlorine binding site 1 out of 1 in 7kt5

Go back to Chlorine Binding Sites List in 7kt5
Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:20.5
occ:1.00
 OG A:SER458 2.9 16.8 0.7
O A:HOH755 3.2 19.9 1.0
N A:SER458 3.2 15.1 0.7
ND1 A:HIS459 3.2 20.7 1.0
N A:SER458 3.2 15.7 0.3
C2' T:DA7 3.6 18.7 1.0
CB A:SER458 3.6 16.0 0.3
CB A:SER458 3.6 16.0 0.7
C1' T:DA7 3.6 19.5 1.0
C4' T:DA7 3.7 19.9 1.0
O4' T:DA7 3.7 20.6 1.0
CA A:SER458 3.7 15.4 0.3
NH2 A:ARG387 3.7 19.5 1.0
CB A:ASN457 3.7 18.8 1.0
CG A:ASN457 3.8 20.0 1.0
CA A:SER458 3.8 15.4 0.7
CE1 A:HIS459 3.8 20.4 1.0
N A:HIS459 4.0 14.9 1.0
C A:SER458 4.0 15.9 0.3
ND2 A:ASN457 4.0 25.7 1.0
C3' T:DA7 4.1 20.2 1.0
C A:SER458 4.1 15.9 0.7
OD1 A:ASN457 4.2 18.8 1.0
O3' T:DA7 4.2 21.2 1.0
C A:ASN457 4.3 17.0 1.0
CG A:HIS459 4.4 19.6 1.0
OG A:SER458 4.5 15.3 0.3
CA A:ASN457 4.5 16.7 1.0
O A:SER458 4.8 16.7 0.3
O A:HOH633 4.8 18.6 1.0
CB A:HIS459 4.9 16.9 1.0
NH2 A:ARG445 4.9 15.1 1.0
C5' T:DA7 5.0 21.2 1.0
O2 A:EDO509 5.0 20.5 1.0
O A:SER458 5.0 16.0 0.7
CZ A:ARG387 5.0 18.5 1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN) To Be Published.
Page generated: Mon Jul 29 23:44:14 2024

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