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Chlorine in PDB 7l3j: T4 Lysozyme L99A - Benzylacetate - Rt

Enzymatic activity of T4 Lysozyme L99A - Benzylacetate - Rt

All present enzymatic activity of T4 Lysozyme L99A - Benzylacetate - Rt:
3.2.1.17;

Protein crystallography data

The structure of T4 Lysozyme L99A - Benzylacetate - Rt, PDB code: 7l3j was solved by M.Fischer, S.Y.C.Bradford, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.93 / 1.49
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 61.113, 61.113, 97.962, 90, 90, 120
R / Rfree (%) 15.4 / 17.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the T4 Lysozyme L99A - Benzylacetate - Rt (pdb code 7l3j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the T4 Lysozyme L99A - Benzylacetate - Rt, PDB code: 7l3j:

Chlorine binding site 1 out of 1 in 7l3j

Go back to Chlorine Binding Sites List in 7l3j
Chlorine binding site 1 out of 1 in the T4 Lysozyme L99A - Benzylacetate - Rt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of T4 Lysozyme L99A - Benzylacetate - Rt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:24.6
occ:1.00
O A:HOH388 3.2 50.0 1.0
N A:ASN144 3.3 16.4 1.0
N A:ARG145 3.4 17.1 1.0
C A:THR142 3.5 16.2 1.0
CA A:THR142 3.6 17.1 1.0
CB A:ASN144 3.7 20.0 1.0
CB A:THR142 3.7 18.0 1.0
N A:PRO143 3.8 15.7 1.0
CA A:ASN144 3.9 17.5 1.0
O A:THR142 3.9 16.4 1.0
CB A:ARG145 4.0 19.4 1.0
C A:ASN144 4.1 16.8 1.0
CD A:PRO143 4.2 17.0 1.0
C A:PRO143 4.3 17.1 1.0
CA A:ARG145 4.3 17.9 1.0
CG2 A:THR142 4.4 20.6 1.0
CA A:PRO143 4.6 16.3 1.0
CG A:ASN144 4.6 24.5 1.0
ND2 A:ASN144 4.7 26.2 1.0
CG A:PRO143 4.9 17.3 1.0
OG1 A:THR142 4.9 19.9 1.0
N A:THR142 5.0 16.9 1.0

Reference:

S.Y.C.Bradford, L.El Khoury, Y.Ge, M.Osato, D.L.Mobley, M.Fischer. Temperature Artifacts in Protein Structures Bias Ligand-Binding Predictions. Chem Sci V. 12 11275 2021.
ISSN: ISSN 2041-6520
PubMed: 34667539
DOI: 10.1039/D1SC02751D
Page generated: Mon Jul 29 23:52:15 2024

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