Chlorine in PDB 7lc0: Structure of D-Glucosaminate-6-Phosphate Ammonia-Lyase

Protein crystallography data

The structure of Structure of D-Glucosaminate-6-Phosphate Ammonia-Lyase, PDB code: 7lc0 was solved by R.S.Phillips, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.02 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.089, 205.572, 164.026, 90, 95.19, 90
R / Rfree (%) 19.3 / 22.8

Other elements in 7lc0:

The structure of Structure of D-Glucosaminate-6-Phosphate Ammonia-Lyase also contains other interesting chemical elements:

Magnesium (Mg) 11 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of D-Glucosaminate-6-Phosphate Ammonia-Lyase (pdb code 7lc0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of D-Glucosaminate-6-Phosphate Ammonia-Lyase, PDB code: 7lc0:

Chlorine binding site 1 out of 1 in 7lc0

Go back to Chlorine Binding Sites List in 7lc0
Chlorine binding site 1 out of 1 in the Structure of D-Glucosaminate-6-Phosphate Ammonia-Lyase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of D-Glucosaminate-6-Phosphate Ammonia-Lyase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl406

b:66.2
occ:1.00
ND2 B:ASN113 3.4 48.7 1.0
CG2 B:THR121 3.6 54.6 1.0
NH2 H:ARG110 3.6 56.8 1.0
OG1 B:THR121 3.6 49.1 1.0
CB B:THR121 4.1 47.8 1.0
OD1 B:ASN113 4.2 53.5 1.0
CZ H:ARG110 4.2 50.8 1.0
CG B:ASN113 4.3 47.8 1.0
NE H:ARG110 4.6 55.5 1.0
NH1 H:ARG110 5.0 51.9 1.0

Reference:

R.S.Phillips, S.C.Ting, K.Anderson. Structure and Mechanism of D-Glucosaminate-6-Phosphate Ammonia-Lyase: A Novel Octameric Assembly For A Pyridoxal 5'-Phosphate-Dependent Enzyme, and Unprecedented Stereochemical Inversion in the Elimination Reaction of A D-Amino Acid. Biochemistry V. 60 1609 2021.
ISSN: ISSN 0006-2960
PubMed: 33949189
DOI: 10.1021/ACS.BIOCHEM.1C00106
Page generated: Sat Jul 10 12:52:39 2021

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