Chlorine in PDB 7ld2: Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak

Enzymatic activity of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak

All present enzymatic activity of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak:
2.3.1.9;

Protein crystallography data

The structure of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak, PDB code: 7ld2 was solved by A.C.Marshall, J.B.Bruning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.83 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 84.679, 79.681, 149.603, 90, 93.45, 90
R / Rfree (%) 23.4 / 27.1

Other elements in 7ld2:

The structure of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak also contains other interesting chemical elements:

Rubidium (Rb) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak (pdb code 7ld2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak, PDB code: 7ld2:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 7ld2

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Chlorine binding site 1 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:33.7
occ:1.00
 O A:ALA60 3.0 35.4 1.0
O A:MET121 3.3 31.3 1.0
CA A:GLY61 3.6 31.0 1.0
CG A:PRO123 3.7 32.4 1.0
CD A:PRO123 3.7 31.3 1.0
C A:GLY61 3.8 30.3 1.0
O A:GLY61 3.9 31.0 1.0
CB A:PRO123 3.9 33.8 1.0
C A:ALA60 4.0 32.1 1.0
N A:GLY61 4.2 35.0 1.0
N A:PRO123 4.4 32.2 1.0
N A:GLU62 4.4 29.1 1.0
C A:MET121 4.5 31.1 1.0
CB B:HIS127 4.7 40.5 1.0
CA A:PRO123 4.8 33.6 1.0
CE A:MET121 4.8 38.8 1.0

Chlorine binding site 2 out of 10 in 7ld2

Go back to Chlorine Binding Sites List in 7ld2
Chlorine binding site 2 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:45.5
occ:1.00
 O A:HOH534 3.2 23.6 1.0
O A:HOH576 3.3 21.1 1.0
CD A:ARG41 3.5 30.1 1.0
CG A:ARG41 3.7 31.3 1.0
CB A:ARG41 3.8 30.8 1.0
NE A:ARG41 4.2 31.9 1.0
CE1 A:PHE363 4.4 30.3 1.0
O A:HOH558 4.4 15.9 1.0
NH1 A:ARG41 4.5 30.6 1.0
CZ A:ARG41 4.6 30.4 1.0
O A:ARG41 4.6 31.9 1.0
CZ A:PHE363 4.6 28.9 1.0
CA A:ARG41 4.7 32.1 1.0
O A:ASP197 4.8 46.5 1.0

Chlorine binding site 3 out of 10 in 7ld2

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Chlorine binding site 3 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:32.7
occ:1.00
 N A:GLY47 2.8 33.2 1.0
CA A:GLY47 3.3 33.9 1.0
C A:ALA46 3.8 31.7 1.0
N A:ALA46 3.8 32.1 1.0
CB A:ALA45 4.0 35.2 1.0
CA A:ALA46 4.1 30.8 1.0
O A:HOH561 4.2 22.1 1.0
CB A:ALA46 4.2 30.8 1.0
C A:ALA45 4.5 32.3 1.0
C A:GLY47 4.6 34.6 1.0
CA A:ALA45 4.8 33.9 1.0
O A:ALA46 4.8 31.6 1.0

Chlorine binding site 4 out of 10 in 7ld2

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Chlorine binding site 4 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl408

b:32.5
occ:1.00
 N A:HIS127 3.3 38.1 1.0
O A:HOH643 3.4 25.4 1.0
CB A:HIS127 3.8 38.1 1.0
CA A:ALA126 3.9 38.0 1.0
C A:ALA126 4.0 38.1 1.0
CA A:HIS127 4.2 38.4 1.0
CG1 A:ILE140 4.3 36.7 1.0
N A:ALA126 4.6 37.3 1.0
CB B:PRO123 4.8 25.1 1.0
O A:CYS125 4.8 37.0 1.0
CB A:ALA126 4.9 39.0 1.0
C A:CYS125 5.0 36.8 1.0
SG A:CYS125 5.0 42.2 1.0

Chlorine binding site 5 out of 10 in 7ld2

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Chlorine binding site 5 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl409

b:41.6
occ:1.00
 N A:ASP284 3.0 39.3 1.0
CB A:VAL283 3.4 34.7 1.0
CA A:VAL283 3.5 36.5 1.0
C A:VAL283 3.7 38.8 1.0
CB A:ASP284 3.8 42.4 1.0
NE2 B:GLN78 3.9 41.1 1.0
CG1 A:VAL283 4.0 33.2 1.0
CA A:ASP284 4.0 41.8 1.0
O A:HOH647 4.3 14.2 1.0
O B:HOH537 4.5 15.8 1.0
CG2 A:VAL283 4.7 34.2 1.0
CD B:GLN78 4.8 39.7 1.0
CG2 A:VAL287 4.8 39.0 1.0
O A:VAL283 4.9 40.5 1.0
N A:VAL283 5.0 36.1 1.0
OG1 A:THR290 5.0 34.1 1.0

Chlorine binding site 6 out of 10 in 7ld2

Go back to Chlorine Binding Sites List in 7ld2
Chlorine binding site 6 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl410

b:44.2
occ:1.00
 N A:ALA262 3.5 35.2 1.0
N A:SER4 3.5 37.1 1.0
O A:SER4 3.6 32.7 1.0
N A:GLU261 3.6 30.0 1.0
CB A:SER260 3.8 31.7 1.0
CB A:ALA262 4.0 40.4 1.0
CB A:SER4 4.0 35.5 1.0
CB A:GLU261 4.1 33.4 1.0
CA A:SER4 4.2 34.9 1.0
CA A:GLU261 4.2 30.7 1.0
C A:GLU261 4.3 37.8 1.0
C A:SER4 4.3 33.2 1.0
OG A:SER260 4.3 33.4 1.0
CA A:ALA262 4.4 38.1 1.0
C A:SER260 4.4 29.7 1.0
C A:PRO3 4.5 41.8 1.0
CA A:PRO3 4.5 41.9 1.0
CA A:SER260 4.5 29.2 1.0
CB A:PRO3 4.9 40.3 1.0

Chlorine binding site 7 out of 10 in 7ld2

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Chlorine binding site 7 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:25.1
occ:1.00
 N B:GLY47 3.0 34.0 1.0
CA B:GLY47 3.4 34.5 1.0
CB B:ALA45 3.5 36.1 1.0
N B:ALA46 3.9 33.2 1.0
C B:ALA46 4.1 32.6 1.0
C B:ALA45 4.4 33.2 1.0
CA B:ALA46 4.5 32.2 1.0
C B:GLY47 4.5 34.0 1.0
CA B:ALA45 4.5 34.5 1.0
O B:HOH555 4.7 16.1 1.0
CB B:ALA46 4.8 32.4 1.0
N B:GLU48 5.0 34.8 1.0

Chlorine binding site 8 out of 10 in 7ld2

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Chlorine binding site 8 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl406

b:29.6
occ:1.00
 OG B:SER260 3.2 35.0 1.0
CB B:SER260 3.8 34.0 1.0
NH2 B:ARG266 4.1 40.4 0.3
O B:HOH604 4.5 12.8 1.0
CB B:ALA262 4.7 38.7 1.0
O B:HOH544 4.7 28.3 1.0

Chlorine binding site 9 out of 10 in 7ld2

Go back to Chlorine Binding Sites List in 7ld2
Chlorine binding site 9 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl407

b:32.4
occ:1.00
 O B:HOH511 2.8 24.6 1.0
OD1 B:ASP214 3.1 55.4 1.0
N B:ASP214 3.5 45.9 1.0
N B:ALA215 3.7 42.9 1.0
O B:THR212 3.8 38.1 1.0
CA B:VAL213 3.9 32.7 1.0
CB B:ALA215 4.0 46.9 1.0
C B:VAL213 4.2 30.2 1.0
CG B:ASP214 4.3 54.5 1.0
CA B:ALA215 4.4 42.4 1.0
O B:ALA215 4.4 43.0 1.0
C B:ASP214 4.4 42.5 1.0
CA B:ASP214 4.4 45.5 1.0
CG1 B:VAL213 4.5 31.2 1.0
C B:THR212 4.7 38.0 1.0
CB B:VAL213 4.7 33.0 1.0
N B:VAL213 4.8 35.4 1.0
C B:ALA215 4.9 39.9 1.0

Chlorine binding site 10 out of 10 in 7ld2

Go back to Chlorine Binding Sites List in 7ld2
Chlorine binding site 10 out of 10 in the Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Zoogloea Ramigera Biosynthetic Thiolase Q183Y Mutant, Rbcl Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl408

b:44.4
occ:1.00
 O A:HOH599 3.3 10.4 1.0
OD2 B:ASP107 3.8 38.1 1.0
OD1 B:ASP107 3.8 39.6 1.0
O A:HOH565 4.0 25.2 1.0
NE1 A:TRP278 4.0 30.6 1.0
CD1 A:TRP278 4.0 28.9 1.0
O A:HOH638 4.0 25.3 1.0
O B:HOH610 4.1 29.2 1.0
O B:THR105 4.2 41.3 1.0
CG B:ASP107 4.2 37.9 1.0
CE A:MET100 4.3 35.9 1.0
SD A:MET100 4.4 36.5 1.0
O B:HOH643 4.6 14.2 1.0
CB B:THR105 4.8 42.4 1.0

Reference:

A.C.Marshall, J.B.Bruning. Engineering Potassium Activation Into Biosynthetic Thiolase. Biochem.J. V. 478 3047 2021.
ISSN: ESSN 1470-8728
PubMed: 34338286
DOI: 10.1042/BCJ20210455
Page generated: Tue Jul 30 00:00:16 2024

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