Chlorine in PDB 7ldd: Native Ampa Receptor

The structure of Native Ampa Receptor also contains other interesting chemical elements:

Fluorine

(F)

18 atoms

The binding sites of Chlorine atom in the Native Ampa Receptor (pdb code 7ldd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Native Ampa Receptor, PDB code: 7ldd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl504 b:85.8 occ:1.00 CL1 G:XVD504 0.0 85.8 1.0 C1 G:XVD504 1.8 85.8 1.0 C2 G:XVD504 2.8 85.8 1.0 C6 G:XVD504 2.8 85.8 1.0 C7 G:XVD504 3.1 85.8 1.0 CA G:GLY209 3.4 88.4 1.0 CZ A:PHE527 3.4 66.6 1.0 C12 G:XVD504 3.6 85.8 1.0 C8 G:XVD504 3.8 85.8 1.0 CE2 A:PHE527 3.9 66.6 1.0 C3 G:XVD504 4.1 85.8 1.0 C5 G:XVD504 4.1 85.8 1.0 C G:GLY209 4.2 88.4 1.0 N G:GLY209 4.3 88.4 1.0 CE1 A:PHE527 4.4 66.6 1.0 O G:TYR206 4.5 98.4 1.0 C11 G:XVD504 4.6 85.8 1.0 C4 G:XVD504 4.6 85.8 1.0 CD1 G:TYR206 4.6 98.4 1.0 O G:GLY209 4.7 88.4 1.0 C9 G:XVD504 4.8 85.8 1.0 CA G:TYR206 4.9 98.4 1.0 N G:LEU210 4.9 86.2 1.0

Chlorine binding site 2 out of 2 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl504 b:85.2 occ:1.00 CL1 H:XVD504 0.0 85.2 1.0 C1 H:XVD504 1.8 85.2 1.0 C2 H:XVD504 2.8 85.2 1.0 C6 H:XVD504 2.8 85.2 1.0 C7 H:XVD504 3.1 85.2 1.0 CA H:GLY209 3.4 87.3 1.0 CZ C:PHE527 3.6 64.2 1.0 C12 H:XVD504 3.6 85.2 1.0 C8 H:XVD504 3.8 85.2 1.0 CE2 C:PHE527 4.0 64.2 1.0 C3 H:XVD504 4.1 85.2 1.0 C5 H:XVD504 4.1 85.2 1.0 C H:GLY209 4.2 87.3 1.0 N H:GLY209 4.3 87.3 1.0 O H:TYR206 4.5 96.8 1.0 C11 H:XVD504 4.6 85.2 1.0 CE1 C:PHE527 4.6 64.2 1.0 C4 H:XVD504 4.6 85.2 1.0 CD1 H:TYR206 4.6 96.8 1.0 O H:GLY209 4.7 87.3 1.0 C9 H:XVD504 4.8 85.2 1.0 CA H:TYR206 4.9 96.8 1.0 N H:LEU210 4.9 86.8 1.0

J.Yu, P.Rao, S.Clark, J.Mitra, T.Ha, E.Gouaux. Hippocampal Ampa Receptor Assemblies and Mechanism of Allosteric Inhibition Nature 2021.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-021-03540-0