Chlorine in PDB 7ltb: Crystal Structure of Keratinicyclin B
Protein crystallography data
The structure of Crystal Structure of Keratinicyclin B, PDB code: 7ltb
was solved by
K.M.Davis,
P.D.Jeffrey,
M.R.Seyedsayamdost,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
21.82 /
0.95
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
24.316,
29.667,
32.209,
90,
90,
90
|
R / Rfree (%)
|
14.6 /
15.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Keratinicyclin B
(pdb code 7ltb). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Crystal Structure of Keratinicyclin B, PDB code: 7ltb:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 7ltb
Go back to
Chlorine Binding Sites List in 7ltb
Chlorine binding site 1 out
of 2 in the Crystal Structure of Keratinicyclin B
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Keratinicyclin B within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl6
b:9.1
occ:0.85
|
CL
|
A:OMY6
|
0.0
|
9.1
|
0.8
|
CE1
|
A:OMY6
|
1.7
|
8.0
|
1.0
|
CZ
|
A:OMY6
|
2.7
|
7.5
|
1.0
|
CD1
|
A:OMY6
|
2.7
|
7.7
|
1.0
|
HD1
|
A:OMY6
|
2.8
|
9.3
|
1.0
|
H31
|
F:Z6G2
|
2.9
|
14.0
|
1.0
|
OCZ
|
A:OMY6
|
2.9
|
7.7
|
1.0
|
H12N
|
F:Z6G2
|
3.0
|
15.2
|
1.0
|
C5
|
A:GHP4
|
3.3
|
7.6
|
1.0
|
H6
|
A:GHP4
|
3.5
|
8.9
|
1.0
|
C6
|
A:GHP4
|
3.6
|
7.4
|
1.0
|
O
|
A:HOH218
|
3.6
|
20.3
|
1.0
|
H2O
|
F:Z6G2
|
3.7
|
14.2
|
1.0
|
O2
|
F:Z6G2
|
3.7
|
11.8
|
1.0
|
C3
|
F:Z6G2
|
3.7
|
11.7
|
1.0
|
N1
|
F:Z6G2
|
3.8
|
12.7
|
1.0
|
O
|
A:HOH204
|
3.9
|
13.4
|
1.0
|
CE2
|
A:OMY6
|
4.0
|
7.8
|
1.0
|
CG
|
A:OMY6
|
4.0
|
7.6
|
1.0
|
C4
|
A:GHP4
|
4.2
|
7.6
|
1.0
|
O
|
A:HOH220
|
4.3
|
30.3
|
1.0
|
H11N
|
F:Z6G2
|
4.3
|
15.2
|
1.0
|
C4
|
F:Z6G2
|
4.3
|
11.1
|
1.0
|
H51
|
F:Z6G2
|
4.4
|
12.3
|
1.0
|
O
|
A:GHP4
|
4.4
|
7.6
|
1.0
|
H61
|
J:Z6G2
|
4.4
|
15.4
|
1.0
|
CD2
|
A:OMY6
|
4.5
|
7.6
|
1.0
|
HN'3
|
F:Z6G2
|
4.6
|
15.2
|
1.0
|
C1
|
A:GHP4
|
4.6
|
7.5
|
1.0
|
O4
|
A:GHP4
|
4.6
|
7.7
|
1.0
|
H63
|
J:Z6G2
|
4.6
|
15.4
|
1.0
|
H62
|
J:Z6G2
|
4.8
|
15.4
|
1.0
|
HE2
|
A:OMY6
|
4.8
|
9.3
|
1.0
|
HA
|
A:GHP5
|
4.8
|
8.7
|
1.0
|
C6
|
J:Z6G2
|
4.9
|
12.8
|
1.0
|
C5
|
F:Z6G2
|
5.0
|
10.3
|
1.0
|
H1
|
F:BGC1
|
5.0
|
10.2
|
1.0
|
C
|
A:GHP4
|
5.0
|
7.4
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 7ltb
Go back to
Chlorine Binding Sites List in 7ltb
Chlorine binding site 2 out
of 2 in the Crystal Structure of Keratinicyclin B
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Keratinicyclin B within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl6
b:9.7
occ:0.82
|
CL
|
B:OMY6
|
0.0
|
9.7
|
0.8
|
CE1
|
B:OMY6
|
1.7
|
8.1
|
1.0
|
HO6
|
J:BGC1
|
2.2
|
19.4
|
1.0
|
CZ
|
B:OMY6
|
2.7
|
7.7
|
1.0
|
CD1
|
B:OMY6
|
2.7
|
8.0
|
1.0
|
HD1
|
B:OMY6
|
2.8
|
9.6
|
1.0
|
H62
|
F:BGC1
|
2.9
|
14.2
|
0.3
|
OCZ
|
B:OMY6
|
3.0
|
8.0
|
1.0
|
H61
|
F:BGC1
|
3.0
|
14.2
|
0.8
|
O6
|
J:BGC1
|
3.1
|
16.2
|
0.7
|
H62
|
J:BGC1
|
3.4
|
18.2
|
1.0
|
C5
|
B:GHP4
|
3.5
|
7.5
|
1.0
|
O
|
B:HOH212
|
3.5
|
29.2
|
1.0
|
O5
|
J:BGC1
|
3.6
|
11.9
|
1.0
|
C6
|
J:BGC1
|
3.7
|
15.1
|
1.0
|
H6
|
B:GHP4
|
3.9
|
8.6
|
1.0
|
C6
|
B:GHP4
|
3.9
|
7.2
|
1.0
|
CE2
|
B:OMY6
|
4.0
|
7.8
|
1.0
|
CG
|
B:OMY6
|
4.0
|
7.9
|
1.0
|
C6
|
F:BGC1
|
4.0
|
11.8
|
1.0
|
H62
|
F:BGC1
|
4.0
|
14.2
|
0.8
|
C5
|
J:BGC1
|
4.3
|
13.2
|
1.0
|
C4
|
B:GHP4
|
4.3
|
7.9
|
1.0
|
HO6
|
F:BGC1
|
4.4
|
14.4
|
0.3
|
O6
|
F:BGC1
|
4.5
|
12.1
|
0.3
|
H61
|
F:BGC1
|
4.5
|
14.2
|
0.3
|
CD2
|
B:OMY6
|
4.5
|
7.9
|
1.0
|
H5
|
F:BGC1
|
4.5
|
12.3
|
1.0
|
O4
|
B:GHP4
|
4.6
|
8.6
|
1.0
|
O
|
B:HOH220
|
4.6
|
10.4
|
0.4
|
C1
|
J:BGC1
|
4.6
|
10.1
|
1.0
|
H5
|
J:BGC1
|
4.7
|
15.8
|
1.0
|
H61
|
J:BGC1
|
4.7
|
18.2
|
1.0
|
HA
|
B:GHP5
|
4.7
|
8.9
|
1.0
|
O6
|
F:BGC1
|
4.8
|
12.4
|
0.8
|
HE2
|
B:OMY6
|
4.8
|
9.3
|
1.0
|
C5
|
F:BGC1
|
4.9
|
10.2
|
1.0
|
HA
|
B:OMY6
|
5.0
|
9.1
|
1.0
|
H1
|
J:BGC1
|
5.0
|
12.1
|
1.0
|
|
Reference:
K.L.Mcwhorter,
V.T.Chioti,
F.Xu,
P.D.Jeffrey,
K.M.Davis,
M.R.Seyedsayamdost.
Structural and Functional Analysis of Keratinicyclin Reveals Synergistic Antibiosis with Vancomycin Against Clostridium Difficile To Be Published.
Page generated: Tue Jul 30 00:12:13 2024
|