Chlorine in PDB 7lvb: Cholera Toxin B Subunit with Attached Siv Epitope

Protein crystallography data

The structure of Cholera Toxin B Subunit with Attached Siv Epitope, PDB code: 7lvb was solved by Y.Patskovsky, T.J.Cardozo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.26 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.29, 112.428, 137.102, 90, 90, 90
R / Rfree (%) 15.7 / 19.8

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Cholera Toxin B Subunit with Attached Siv Epitope (pdb code 7lvb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Cholera Toxin B Subunit with Attached Siv Epitope, PDB code: 7lvb:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 1 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl204

b:58.4
occ:1.00
 O3 D:PGE202 3.4 54.1 1.0
N D:HIS13 3.4 36.8 1.0
O D:HOH337 3.5 41.3 1.0
CD2 D:TYR12 3.9 36.4 1.0
CA D:TYR12 3.9 36.8 1.0
ND1 D:HIS13 3.9 60.8 1.0
C D:TYR12 4.2 39.0 1.0
CB D:HIS13 4.2 45.4 1.0
CB D:TYR12 4.3 36.9 1.0
CA D:HIS13 4.4 40.4 1.0
CG D:HIS13 4.5 52.4 1.0
CG D:TYR12 4.5 36.6 1.0
O D:GLU11 4.6 38.9 1.0
CE2 D:TYR12 4.7 35.7 1.0
O D:HIS13 4.7 36.0 1.0
C4 D:PGE202 4.7 52.2 1.0
CE1 D:HIS13 4.9 62.0 1.0

Chlorine binding site 2 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 2 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl203

b:54.9
occ:1.00
 O E:HOH312 3.3 40.7 1.0
N E:HIS13 3.4 39.5 1.0
O3 E:PGE202 3.7 59.0 1.0
CA E:TYR12 3.9 37.3 1.0
CD2 E:HIS13 4.0 57.6 1.0
CD2 E:TYR12 4.0 37.0 1.0
CB E:HIS13 4.1 47.4 1.0
C E:TYR12 4.1 38.0 1.0
CB E:TYR12 4.2 36.9 1.0
CG E:HIS13 4.2 54.7 1.0
CA E:HIS13 4.3 43.4 1.0
CG E:TYR12 4.5 37.9 1.0
O E:HIS13 4.6 35.4 1.0
O E:GLU11 4.7 38.1 1.0
CE2 E:TYR12 4.9 36.4 1.0
NE2 E:HIS13 5.0 61.9 1.0
O E:HOH348 5.0 35.1 1.0
C E:HIS13 5.0 38.9 1.0

Chlorine binding site 3 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 3 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl203

b:61.7
occ:1.00
 O G:HOH347 3.3 42.8 1.0
N G:HIS13 3.4 44.0 1.0
O1 G:PGE202 3.5 60.4 1.0
O G:HOH362 3.9 47.5 1.0
CA G:TYR12 3.9 37.7 1.0
CD2 G:TYR12 3.9 36.1 1.0
CD2 G:HIS13 4.1 62.2 1.0
CB G:HIS13 4.1 49.0 1.0
C G:TYR12 4.2 39.9 1.0
CB G:TYR12 4.2 37.6 1.0
CG G:HIS13 4.3 58.8 1.0
CA G:HIS13 4.4 44.0 1.0
CG G:TYR12 4.5 35.4 1.0
O G:GLU11 4.6 41.0 1.0
C1 G:PGE202 4.7 58.9 1.0
O G:HIS13 4.8 38.1 1.0
CE2 G:TYR12 4.9 37.4 1.0

Chlorine binding site 4 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 4 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl204

b:43.3
occ:1.00
 O F:HOH309 3.1 30.7 1.0
N G:THR92 3.3 31.8 1.0
O G:HOH332 3.4 41.7 1.0
O G:THR92 3.8 33.3 1.0
CA G:LYS91 3.8 31.1 1.0
CD G:LYS91 3.8 33.6 1.0
C G:LYS91 4.1 31.0 1.0
CA G:THR92 4.3 34.3 1.0
CB G:LYS91 4.3 30.1 1.0
OG1 F:THR1 4.4 41.6 1.0
C G:THR92 4.4 33.7 1.0
CB G:THR92 4.5 41.1 1.0
O G:ASN90 4.6 33.0 1.0
CG G:LYS91 4.7 29.6 1.0
CE G:LYS91 4.7 35.7 1.0
O G:HOH335 4.8 47.3 1.0
OG1 G:THR92 5.0 41.6 1.0
N G:LYS91 5.0 30.5 1.0

Chlorine binding site 5 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 5 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl202

b:62.7
occ:1.00
 O H:HOH339 3.3 48.7 1.0
O1 D:PGE203 3.4 64.5 1.0
N H:HIS13 3.6 42.2 1.0
CA H:TYR12 4.1 37.4 1.0
CD2 H:TYR12 4.1 35.2 1.0
CD2 H:HIS13 4.2 61.8 1.0
O H:HOH357 4.3 43.6 1.0
CB H:HIS13 4.3 51.6 1.0
CG H:HIS13 4.3 57.8 1.0
C H:TYR12 4.4 38.8 1.0
CB H:TYR12 4.4 38.0 1.0
CA H:HIS13 4.5 46.8 1.0
C1 D:PGE203 4.7 63.1 1.0
CG H:TYR12 4.7 36.5 1.0
O H:GLU11 4.8 39.9 1.0
O H:HIS13 4.9 42.9 1.0

Chlorine binding site 6 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 6 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:55.0
occ:1.00
 O A:HOH341 3.3 34.1 1.0
N A:HIS13 3.4 36.2 1.0
O3 A:PGE202 3.5 54.5 1.0
CA A:TYR12 4.0 33.4 1.0
CD2 A:TYR12 4.0 33.8 1.0
CD2 A:HIS13 4.1 55.7 1.0
CB A:HIS13 4.2 43.9 1.0
C A:TYR12 4.2 34.3 1.0
CG A:HIS13 4.3 50.9 1.0
CA A:HIS13 4.3 37.7 1.0
CB A:TYR12 4.4 31.7 1.0
CG A:TYR12 4.6 33.9 1.0
O A:HIS13 4.7 29.5 1.0
C4 A:PGE202 4.7 54.4 1.0
O A:GLU11 4.8 35.6 1.0
CE2 A:TYR12 4.9 34.8 1.0
O A:HOH349 4.9 36.1 1.0

Chlorine binding site 7 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 7 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl204

b:58.7
occ:1.00
 N B:HIS13 3.2 35.9 1.0
O B:HOH332 3.3 37.4 1.0
O3 B:PGE202 3.5 66.3 1.0
CD2 B:HIS13 3.7 57.5 1.0
CA B:TYR12 3.8 36.8 1.0
CB B:HIS13 4.0 41.6 1.0
CD2 B:TYR12 4.0 32.0 1.0
C B:TYR12 4.0 36.4 1.0
CG B:HIS13 4.0 52.0 1.0
CA B:HIS13 4.1 38.8 1.0
CB B:TYR12 4.2 36.5 1.0
CG B:TYR12 4.5 34.9 1.0
O B:GLU11 4.5 38.8 1.0
O B:HIS13 4.6 36.7 1.0
NE2 B:HIS13 4.8 57.5 1.0
CE2 B:TYR12 4.9 33.6 1.0
C B:HIS13 4.9 38.6 1.0
C4 B:PGE202 4.9 64.2 1.0
N B:TYR12 5.0 38.0 1.0
O B:HOH350 5.0 42.7 1.0

Chlorine binding site 8 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 8 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:64.8
occ:1.00
 N B:THR19 3.0 35.0 1.0
O B:THR19 3.5 41.1 1.0
CA B:HIS18 3.7 38.1 1.0
C B:HIS18 3.8 36.2 1.0
CA B:THR19 3.9 38.1 1.0
CB B:THR19 4.0 38.0 1.0
C B:THR19 4.1 38.9 1.0
O B:ILE17 4.4 39.2 1.0
CB B:HIS18 4.4 39.2 1.0
OG1 B:THR19 4.4 42.5 1.0
ND1 B:HIS18 4.6 42.9 1.0
N B:HIS18 4.8 38.3 1.0
CG B:HIS18 4.8 39.1 1.0
C B:ILE17 5.0 37.1 1.0

Chlorine binding site 9 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 9 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl204

b:62.2
occ:1.00
 O C:HOH349 3.2 37.6 1.0
N C:HIS13 3.4 39.0 1.0
O3 C:PGE202 3.6 61.7 1.0
C4 C:PGE202 3.7 60.9 1.0
ND1 C:HIS13 3.8 65.3 1.0
CD2 C:TYR12 3.9 36.0 1.0
CA C:TYR12 3.9 35.4 1.0
C C:TYR12 4.2 36.0 1.0
CB C:HIS13 4.2 48.9 1.0
CB C:TYR12 4.3 34.2 1.0
CG C:HIS13 4.4 59.2 1.0
CA C:HIS13 4.4 42.4 1.0
CG C:TYR12 4.5 34.5 1.0
O C:GLU11 4.5 39.0 1.0
CE1 C:HIS13 4.7 64.1 1.0
CE2 C:TYR12 4.8 36.2 1.0
O C:HIS13 4.8 38.7 1.0
O C:HOH351 4.9 39.6 1.0

Chlorine binding site 10 out of 11 in 7lvb

Go back to Chlorine Binding Sites List in 7lvb
Chlorine binding site 10 out of 11 in the Cholera Toxin B Subunit with Attached Siv Epitope


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Cholera Toxin B Subunit with Attached Siv Epitope within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl204

b:58.2
occ:1.00
 O I:HOH346 3.2 38.1 1.0
N I:HIS13 3.3 38.3 1.0
O1 I:PGE202 3.5 62.3 1.0
CA I:TYR12 3.9 38.6 1.0
CD2 I:HIS13 3.9 62.8 1.0
CB I:HIS13 4.0 48.5 1.0
CD2 I:TYR12 4.1 37.2 1.0
C I:TYR12 4.1 36.0 1.0
CG I:HIS13 4.1 56.5 1.0
CA I:HIS13 4.2 43.4 1.0
CB I:TYR12 4.2 39.1 1.0
CG I:TYR12 4.5 37.0 1.0
O I:GLU11 4.6 38.0 1.0
O I:HIS13 4.7 40.4 1.0
NE2 I:HIS13 4.8 64.7 1.0
C1 I:PGE202 4.9 62.4 1.0
C I:HIS13 4.9 41.8 1.0
CE2 I:TYR12 5.0 36.0 1.0

Reference:

Y.Patskovsky, T.J.Cardozo. Cholera Toxin B Subunit with Attached Siv Epitope To Be Published.
Page generated: Tue Jul 30 00:13:16 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy