Chlorine in PDB 7lzr: Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256

The structure of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256, PDB code: 7lzr was solved by D.A.Kuntz, G.G.Prive, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.30 / 1.34
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.363, 73.055, 64.421, 90, 109.5, 90
R / Rfree (%)	13.5 / 15.9

The binding sites of Chlorine atom in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 (pdb code 7lzr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256, PDB code: 7lzr:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:59.8 occ:0.98 H A:ASN73 2.1 25.6 1.0 HA A:ILE72 2.9 24.4 1.0 N A:ASN73 3.1 21.3 1.0 HD22 A:ASN73 3.1 41.9 1.0 HB2 A:ASN73 3.3 30.7 1.0 HD13 A:ILE72 3.7 28.4 1.0 CA A:ILE72 3.7 20.3 1.0 HG23 A:ILE72 3.7 28.1 1.0 ND2 A:ASN73 3.9 35.0 1.0 C A:ILE72 3.9 21.0 1.0 CB A:ASN73 4.0 25.6 1.0 O A:VAL71 4.0 22.7 1.0 HD13 A:LEU69 4.1 30.6 1.0 CA A:ASN73 4.1 23.2 1.0 O A:ASN73 4.1 26.5 1.0 HD11 A:ILE72 4.2 28.4 1.0 CG A:ASN73 4.3 30.2 1.0 CD1 A:ILE72 4.4 23.7 1.0 HD21 A:ASN73 4.5 41.9 1.0 CG2 A:ILE72 4.5 23.4 1.0 C A:ASN73 4.6 24.2 1.0 CB A:ILE72 4.6 21.5 1.0 HG21 A:ILE72 4.7 28.1 1.0 N A:ILE72 4.7 19.0 1.0 C A:VAL71 4.7 20.5 1.0 CD1 A:LEU69 4.8 25.5 1.0 HB3 A:ASN73 4.9 30.7 1.0 HA A:ASN73 4.9 27.8 1.0 HD11 A:LEU69 5.0 30.6 1.0

Chlorine binding site 2 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:16.2 occ:0.97 CL22 A:YJJ204 0.0 16.2 1.0 C21 A:YJJ204 1.7 18.2 1.0 C20 A:YJJ204 2.7 20.0 1.0 C16 A:YJJ204 2.7 18.9 1.0 HB3 B:ASN21 2.8 19.1 1.0 HA A:ALA52 2.9 16.2 1.0 HD22 B:LEU25 3.0 21.0 1.0 N15 A:YJJ204 3.0 17.7 1.0 HG B:LEU25 3.1 20.2 1.0 HB3 A:MET51 3.1 17.2 1.0 HD12 B:LEU25 3.2 20.5 1.0 O A:MET51 3.3 13.8 1.0 HD1 A:TYR58 3.3 24.7 1.0 C A:MET51 3.5 12.6 1.0 N A:ALA52 3.6 12.4 1.0 CG B:LEU25 3.6 16.8 1.0 CA A:ALA52 3.6 13.5 1.0 CD2 B:LEU25 3.7 17.5 1.0 HB2 A:MET51 3.7 17.2 1.0 HE1 A:TYR58 3.7 29.6 1.0 CB A:MET51 3.8 14.4 1.0 CB B:ASN21 3.8 15.9 1.0 CD1 A:TYR58 3.8 20.6 1.0 CD1 B:LEU25 3.8 17.1 1.0 O B:ASN21 3.9 15.8 1.0 HD23 B:LEU25 3.9 21.0 1.0 HB1 A:ALA52 3.9 16.0 1.0 N19 A:YJJ204 3.9 22.2 1.0 C17 A:YJJ204 4.0 22.4 1.0 CE1 A:TYR58 4.0 24.7 1.0 H A:ALA52 4.1 14.9 1.0 HE1 A:MET51 4.1 23.9 1.0 HD11 B:LEU25 4.2 20.5 1.0 CA A:MET51 4.2 13.4 1.0 CB A:ALA52 4.3 13.3 1.0 C B:ASN21 4.3 14.8 1.0 CG B:ASN21 4.3 15.9 1.0 HB2 B:ASN21 4.3 19.1 1.0 C13 A:YJJ204 4.4 17.0 1.0 C18 A:YJJ204 4.4 25.8 1.0 HA B:ASN21 4.5 19.2 1.0 CA B:ASN21 4.5 16.0 1.0 HD21 B:LEU25 4.5 21.0 1.0 HB2 A:TYR58 4.6 19.8 1.0 HD13 B:LEU25 4.6 20.5 1.0 HB2 A:ALA52 4.7 16.0 1.0 ND2 B:ASN21 4.7 17.1 1.0 HA A:MET51 4.7 16.1 1.0 CG A:TYR58 4.8 19.4 1.0 C A:ALA52 4.8 13.4 1.0 OD1 B:ASN21 4.9 18.9 1.0 HD21 B:ASN21 4.9 20.5 1.0 O A:THR48 4.9 13.6 1.0 HB2 B:ARG24 5.0 25.0 1.0

Chlorine binding site 3 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:15.1 occ:0.98 CL22 B:YJJ201 0.0 15.1 1.0 C21 B:YJJ201 1.7 15.0 1.0 C20 B:YJJ201 2.7 16.9 1.0 C16 B:YJJ201 2.7 15.7 1.0 HB3 A:ASN21 2.8 17.3 1.0 HA B:ALA52 2.9 16.0 1.0 N15 B:YJJ201 3.0 15.6 1.0 HD22 A:LEU25 3.0 19.6 1.0 HB3 B:MET51 3.2 18.5 1.0 HG A:LEU25 3.2 18.1 1.0 HD12 A:LEU25 3.2 18.9 1.0 O B:MET51 3.3 13.6 1.0 HD1 B:TYR58 3.5 26.6 1.0 C B:MET51 3.5 12.9 1.0 N B:ALA52 3.6 12.9 1.0 CA B:ALA52 3.6 13.3 1.0 CD2 A:LEU25 3.7 16.3 1.0 CG A:LEU25 3.7 15.1 1.0 HE1 B:TYR58 3.7 31.8 1.0 HB2 B:MET51 3.8 18.5 1.0 CB A:ASN21 3.8 14.4 1.0 CB B:MET51 3.8 15.4 1.0 CD1 B:TYR58 3.9 22.2 1.0 CD1 A:LEU25 3.9 15.7 1.0 HD23 A:LEU25 3.9 19.6 1.0 N19 B:YJJ201 3.9 17.7 1.0 C17 B:YJJ201 4.0 17.0 1.0 HB1 B:ALA52 4.0 16.9 1.0 O A:ASN21 4.0 14.5 1.0 CE1 B:TYR58 4.0 26.5 1.0 H B:ALA52 4.2 15.5 1.0 HE1 B:MET51 4.2 33.9 1.0 CG A:ASN21 4.3 15.7 1.0 HD11 A:LEU25 4.3 18.9 1.0 CA B:MET51 4.3 13.8 1.0 HB2 A:ASN21 4.3 17.3 1.0 C13 B:YJJ201 4.3 16.0 1.0 CB B:ALA52 4.4 14.1 1.0 C18 B:YJJ201 4.4 18.8 1.0 C A:ASN21 4.4 13.9 1.0 HD22 A:ASN21 4.5 19.4 1.0 HD21 A:LEU25 4.5 19.6 1.0 HA A:ASN21 4.5 17.0 1.0 CA A:ASN21 4.5 14.2 1.0 ND2 A:ASN21 4.6 16.2 1.0 HD13 A:LEU25 4.7 18.9 1.0 HB2 B:ALA52 4.7 16.9 1.0 C B:ALA52 4.8 13.6 1.0 OD1 A:ASN21 4.8 17.5 1.0 HB2 B:TYR58 4.8 19.2 1.0 HA B:MET51 4.8 16.6 1.0 CG B:TYR58 4.9 19.5 1.0 HB2 A:ARG24 5.0 21.2 1.0 C12 B:YJJ201 5.0 15.1 1.0

Chlorine binding site 4 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl203 b:63.2 occ:0.91 H B:GLY100 2.7 37.0 1.0 HH11 B:ARG98 2.8 77.6 1.0 HD2 B:ARG98 2.8 61.9 1.0 HB2 B:ARG98 3.0 45.8 1.0 N B:GLY100 3.2 30.8 1.0 H B:GLU99 3.2 39.8 1.0 HG3 B:ARG98 3.5 52.4 1.0 HA3 B:GLY100 3.6 36.3 1.0 NH1 B:ARG98 3.6 64.7 1.0 N B:GLU99 3.6 33.2 1.0 CD B:ARG98 3.6 51.6 1.0 CB B:ARG98 3.7 38.1 1.0 CG B:ARG98 3.8 43.7 1.0 CB B:GLU99 3.9 31.5 1.0 CA B:GLY100 3.9 30.3 1.0 HH12 B:ARG98 4.0 77.6 1.0 CA B:GLU99 4.0 33.9 1.0 C B:GLU99 4.0 32.5 1.0 HD3 B:ARG98 4.2 61.9 1.0 C B:ARG98 4.3 29.9 1.0 HB3 B:ARG98 4.4 45.8 1.0 CZ B:ARG98 4.5 65.2 1.0 NE B:ARG98 4.5 60.5 1.0 HA2 B:GLY100 4.5 36.3 1.0 CA B:ARG98 4.6 33.0 1.0 HG2 B:ARG98 4.7 52.4 1.0 H B:ASN101 4.8 28.4 1.0 CG B:GLU99 4.8 31.0 1.0 HA B:ARG98 5.0 39.6 1.0 HA B:GLU99 5.0 40.7 1.0

Chlorine binding site 5 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl204 b:50.5 occ:1.00 H B:THR12 2.4 29.5 1.0 HE B:ARG13 2.9 67.8 1.0 HH21 B:ARG13 3.1 79.7 1.0 HA B:PHE11 3.2 27.0 1.0 HE1 A:HIS116 3.2 37.9 1.0 N B:THR12 3.3 24.6 1.0 H B:ARG13 3.3 28.1 1.0 OG1 B:THR12 3.4 40.1 1.0 HG23 B:THR12 3.8 43.4 1.0 NE B:ARG13 3.8 56.5 1.0 NH2 B:ARG13 3.9 66.4 1.0 CA B:PHE11 4.0 22.5 1.0 C B:PHE11 4.0 23.2 1.0 CE1 A:HIS116 4.2 31.6 1.0 CA B:THR12 4.2 27.3 1.0 N B:ARG13 4.2 23.4 1.0 CB B:THR12 4.2 33.4 1.0 CZ B:ARG13 4.3 63.7 1.0 HG3 B:ARG13 4.3 44.3 1.0 HB3 B:PHE11 4.4 28.1 1.0 HB2 B:ARG13 4.4 35.2 1.0 CG2 B:THR12 4.4 36.1 1.0 HH22 B:ARG13 4.5 79.7 1.0 C B:THR12 4.7 26.2 1.0 O B:GLN10 4.7 26.0 1.0 CB B:PHE11 4.7 23.4 1.0 HE2 A:HIS116 4.7 37.4 1.0 NE2 A:HIS116 4.9 31.2 1.0 HG22 B:THR12 4.9 43.4 1.0 CG B:ARG13 4.9 36.9 1.0 CD B:ARG13 4.9 45.2 1.0 CB B:ARG13 5.0 29.3 1.0

Chlorine binding site 6 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl203 b:15.6 occ:1.00 CL22 C:YJJ203 0.0 15.6 1.0 C21 C:YJJ203 1.7 15.5 1.0 C20 C:YJJ203 2.7 17.6 1.0 C16 C:YJJ203 2.7 15.9 1.0 HB3 D:ASN21 2.8 15.8 1.0 HA C:ALA52 2.9 14.8 1.0 HD22 D:LEU25 2.9 18.4 1.0 N15 C:YJJ203 3.0 15.3 1.0 HB3 C:MET51 3.1 16.5 1.0 HG D:LEU25 3.2 16.9 1.0 HD12 D:LEU25 3.3 17.9 1.0 O C:MET51 3.3 13.3 1.0 HD1 C:TYR58 3.3 21.4 1.0 C C:MET51 3.5 12.4 1.0 HE1 C:TYR58 3.6 23.1 1.0 CD2 D:LEU25 3.6 15.4 1.0 N C:ALA52 3.7 12.5 1.0 CA C:ALA52 3.7 12.3 1.0 CG D:LEU25 3.7 14.1 1.0 CB D:ASN21 3.8 13.2 1.0 HB2 C:MET51 3.8 16.5 1.0 CD1 C:TYR58 3.8 17.8 1.0 CB C:MET51 3.8 13.8 1.0 HD23 D:LEU25 3.8 18.4 1.0 CD1 D:LEU25 3.9 14.9 1.0 N19 C:YJJ203 3.9 17.8 1.0 C17 C:YJJ203 4.0 17.7 1.0 CE1 C:TYR58 4.0 19.3 1.0 O D:ASN21 4.0 12.4 1.0 HB1 C:ALA52 4.1 15.2 1.0 HE1 C:MET51 4.1 22.3 1.0 CG D:ASN21 4.2 14.3 1.0 H C:ALA52 4.2 15.0 1.0 CA C:MET51 4.3 13.2 1.0 HB2 D:ASN21 4.3 15.8 1.0 HD11 D:LEU25 4.3 17.9 1.0 C13 C:YJJ203 4.4 15.4 1.0 C18 C:YJJ203 4.4 18.9 1.0 C D:ASN21 4.4 12.1 1.0 CB C:ALA52 4.4 12.7 1.0 HD21 D:LEU25 4.4 18.4 1.0 HA D:ASN21 4.5 14.6 1.0 HD22 D:ASN21 4.5 18.7 1.0 CA D:ASN21 4.5 12.2 1.0 ND2 D:ASN21 4.6 15.6 1.0 HB2 C:TYR58 4.7 19.2 1.0 HD13 D:LEU25 4.7 17.9 1.0 CG C:TYR58 4.7 17.9 1.0 OD1 D:ASN21 4.8 15.8 1.0 HA C:MET51 4.8 15.8 1.0 HB2 C:ALA52 4.8 15.2 1.0 C C:ALA52 4.8 13.0 1.0 CZ C:TYR58 4.9 23.0 1.0 HB2 D:ARG24 4.9 17.1 1.0 H D:LEU25 5.0 16.0 1.0 C12 C:YJJ203 5.0 14.7 1.0

Chlorine binding site 7 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl204 b:38.4 occ:0.97 H D:LEU31 2.0 17.8 1.0 HH11 C:ARG67 2.3 25.4 1.0 HD3 C:ARG67 2.9 25.9 1.0 N D:LEU31 3.0 14.8 1.0 NH1 C:ARG67 3.1 21.2 1.0 HD2 C:ARG67 3.1 25.9 1.0 O D:HOH355 3.2 44.5 1.0 HA D:ILE30 3.2 19.8 1.0 HA D:LEU31 3.3 18.9 1.0 CD C:ARG67 3.5 21.6 1.0 HH12 C:ARG67 3.5 25.4 1.0 CA D:LEU31 3.7 15.7 1.0 O D:ASP29 3.8 21.9 1.0 HG D:LEU31 3.9 24.3 1.0 HD23 D:LEU31 4.0 27.3 1.0 CA D:ILE30 4.0 16.5 1.0 C D:ILE30 4.0 15.0 1.0 HG23 D:ILE30 4.1 20.5 1.0 CZ C:ARG67 4.1 21.2 1.0 NE C:ARG67 4.2 21.6 1.0 HG2 C:ARG67 4.5 25.8 1.0 H D:THR32 4.5 18.6 1.0 CG D:LEU31 4.6 20.3 1.0 CG C:ARG67 4.7 21.5 1.0 CD2 D:LEU31 4.7 22.8 1.0 C D:LEU31 4.7 15.0 1.0 CB D:LEU31 4.7 17.3 1.0 C D:ASP29 4.8 18.6 1.0 CG2 D:ILE30 4.8 17.1 1.0 HG12 D:ILE30 4.8 24.1 1.0 N D:THR32 4.9 15.5 1.0 HG21 D:ILE30 4.9 20.5 1.0 HD21 C:ASN68 4.9 70.4 1.0 N D:ILE30 4.9 16.1 1.0 CB D:ILE30 4.9 17.3 1.0 HD22 D:LEU31 5.0 27.3 1.0

Chlorine binding site 8 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl201 b:14.4 occ:1.00 CL22 D:YJJ201 0.0 14.4 1.0 C21 D:YJJ201 1.7 13.2 1.0 C20 D:YJJ201 2.7 13.9 1.0 C16 D:YJJ201 2.7 13.5 1.0 HB3 C:ASN21 2.7 16.4 1.0 HA D:ALA52 2.9 14.8 1.0 HD22 C:LEU25 3.0 19.3 1.0 N15 D:YJJ201 3.0 13.4 1.0 HG C:LEU25 3.1 18.2 1.0 HD12 C:LEU25 3.2 18.8 1.0 HB3 D:MET51 3.2 18.7 1.0 O D:MET51 3.3 13.1 1.0 HD1 D:TYR58 3.4 17.9 1.0 C D:MET51 3.6 12.9 1.0 CD2 C:LEU25 3.6 16.1 1.0 CB C:ASN21 3.6 13.7 1.0 CG C:LEU25 3.6 15.2 1.0 CA D:ALA52 3.7 12.3 1.0 N D:ALA52 3.7 12.1 1.0 HE1 D:TYR58 3.8 19.2 1.0 CD1 D:TYR58 3.8 15.0 1.0 CD1 C:LEU25 3.8 15.6 1.0 HD23 C:LEU25 3.8 19.3 1.0 HB2 D:MET51 3.8 18.7 1.0 O C:ASN21 3.9 13.6 1.0 CB D:MET51 3.9 15.6 1.0 N19 D:YJJ201 3.9 13.3 1.0 C17 D:YJJ201 3.9 13.5 1.0 CG C:ASN21 4.0 14.5 1.0 HB1 D:ALA52 4.0 15.2 1.0 CE1 D:TYR58 4.1 16.0 1.0 HB2 C:ASN21 4.2 16.4 1.0 HD11 C:LEU25 4.2 18.8 1.0 H D:ALA52 4.3 14.6 1.0 C C:ASN21 4.3 12.9 1.0 HE1 D:MET51 4.3 22.6 1.0 C13 D:YJJ201 4.3 14.5 1.0 HA C:ASN21 4.4 16.4 1.0 CA D:MET51 4.4 13.6 1.0 CA C:ASN21 4.4 13.7 1.0 CB D:ALA52 4.4 12.7 1.0 C18 D:YJJ201 4.4 13.3 1.0 HD22 C:ASN21 4.4 18.5 1.0 HD21 C:LEU25 4.4 19.3 1.0 ND2 C:ASN21 4.5 15.4 1.0 OD1 C:ASN21 4.5 15.7 1.0 HD13 C:LEU25 4.6 18.8 1.0 HB2 D:TYR58 4.7 16.9 1.0 HB2 D:ALA52 4.8 15.2 1.0 CG D:TYR58 4.8 14.4 1.0 C D:ALA52 4.8 12.7 1.0 HA D:MET51 4.9 16.3 1.0 H C:LEU25 4.9 17.1 1.0 HB2 C:ARG24 4.9 17.2 1.0

Chlorine binding site 9 out of 9 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl204 b:63.1 occ:0.99 HZ3 D:LYS66 2.4 46.1 1.0 HD12 D:ILE60 3.2 19.6 1.0 NZ D:LYS66 3.3 38.4 1.0 HZ2 D:LYS66 3.6 46.1 1.0 HZ1 D:LYS66 3.6 46.1 1.0 HD13 D:ILE60 3.6 19.6 1.0 HG12 D:ILE60 3.6 19.3 1.0 CD1 D:ILE60 3.8 16.4 1.0 HD3 D:LYS66 4.0 35.3 1.0 CG1 D:ILE60 4.2 16.1 1.0 HG23 D:ILE72 4.3 22.2 1.0 HD12 D:LEU56 4.3 24.8 1.0 CE D:LYS66 4.3 34.7 1.0 O D:ASN73 4.4 22.5 1.0 HD23 D:LEU74 4.4 27.6 1.0 HE2 D:LYS66 4.4 41.6 1.0 HG13 D:ILE60 4.6 19.3 1.0 CD D:LYS66 4.6 29.4 1.0 HA D:LEU74 4.6 22.2 1.0 HD11 D:ILE60 4.7 19.6 1.0 HD22 D:LEU56 4.7 23.2 1.0 HD2 D:LYS66 4.8 35.3 1.0 HD21 D:LEU74 4.8 27.6 1.0 OH D:TYR111 4.9 21.4 1.0 HG22 D:ILE72 4.9 22.2 1.0 CG2 D:ILE72 4.9 18.5 1.0 HG21 D:ILE72 5.0 22.2 1.0

D.A.Kuntz, G.G.Prive. Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-10256 To Be Published.