Chlorine in PDB 7lzs: Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029
Protein crystallography data
The structure of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029, PDB code: 7lzs
was solved by
D.A.Kuntz,
G.G.Prive,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.91 /
1.49
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
30.907,
72.425,
54.816,
90,
104.59,
90
|
R / Rfree (%)
|
15.6 /
17.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029
(pdb code 7lzs). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029, PDB code: 7lzs:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 7lzs
Go back to
Chlorine Binding Sites List in 7lzs
Chlorine binding site 1 out
of 2 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:20.5
occ:0.96
|
CL35
|
A:YJS201
|
0.0
|
20.5
|
1.0
|
C34
|
A:YJS201
|
1.8
|
17.3
|
1.0
|
C36
|
A:YJS201
|
2.7
|
17.0
|
1.0
|
C32
|
A:YJS201
|
2.7
|
18.6
|
1.0
|
H361
|
A:YJS201
|
2.8
|
20.4
|
1.0
|
HB3
|
A:ASP17
|
2.9
|
23.0
|
1.0
|
O33
|
A:YJS201
|
3.0
|
19.6
|
1.0
|
H331
|
A:YJS201
|
3.0
|
23.6
|
1.0
|
HB2
|
A:ASP17
|
3.0
|
23.0
|
1.0
|
HG23
|
A:VAL18
|
3.2
|
16.5
|
1.0
|
ND1
|
A:HIS14
|
3.3
|
15.4
|
1.0
|
CB
|
A:ASP17
|
3.4
|
19.2
|
1.0
|
HA
|
A:HIS14
|
3.5
|
19.6
|
1.0
|
HG22
|
A:VAL18
|
3.6
|
16.5
|
1.0
|
HE1
|
A:HIS14
|
3.7
|
17.8
|
1.0
|
O
|
A:HIS14
|
3.7
|
18.0
|
1.0
|
CE1
|
A:HIS14
|
3.8
|
14.8
|
1.0
|
O
|
A:HOH362
|
3.8
|
39.1
|
1.0
|
CG2
|
A:VAL18
|
3.8
|
13.7
|
1.0
|
H
|
A:VAL18
|
3.8
|
17.4
|
1.0
|
N
|
A:VAL18
|
3.9
|
14.5
|
1.0
|
C28
|
A:YJS201
|
4.0
|
17.9
|
1.0
|
C26
|
A:YJS201
|
4.0
|
16.1
|
1.0
|
C
|
A:ASP17
|
4.1
|
16.1
|
1.0
|
HA
|
A:VAL18
|
4.1
|
15.5
|
1.0
|
O
|
A:HOH377
|
4.2
|
48.0
|
1.0
|
CG
|
A:HIS14
|
4.3
|
16.4
|
1.0
|
CA
|
A:HIS14
|
4.3
|
16.4
|
1.0
|
CA
|
A:ASP17
|
4.3
|
17.3
|
1.0
|
OD2
|
A:ASP17
|
4.4
|
25.2
|
1.0
|
CA
|
A:VAL18
|
4.4
|
12.9
|
1.0
|
CG
|
A:ASP17
|
4.5
|
23.2
|
1.0
|
C
|
A:HIS14
|
4.5
|
16.7
|
1.0
|
C27
|
A:YJS201
|
4.5
|
16.2
|
1.0
|
HG21
|
A:VAL18
|
4.5
|
16.5
|
1.0
|
O
|
A:ASP17
|
4.6
|
17.7
|
1.0
|
HD22
|
A:ASN21
|
4.6
|
18.7
|
1.0
|
H161
|
A:YJS201
|
4.7
|
20.4
|
1.0
|
CB
|
A:HIS14
|
4.7
|
16.7
|
1.0
|
CB
|
A:VAL18
|
4.7
|
13.4
|
1.0
|
H301
|
A:YJS201
|
4.8
|
24.2
|
1.0
|
NE2
|
A:HIS14
|
4.8
|
15.3
|
1.0
|
HB2
|
A:HIS14
|
4.8
|
20.0
|
1.0
|
HD21
|
A:ASN21
|
4.9
|
18.7
|
1.0
|
ND2
|
A:ASN21
|
5.0
|
15.6
|
1.0
|
H
|
A:ASP17
|
5.0
|
21.1
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 7lzs
Go back to
Chlorine Binding Sites List in 7lzs
Chlorine binding site 2 out
of 2 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:17.0
occ:0.96
|
CL38
|
A:YJS201
|
0.0
|
17.0
|
1.0
|
C37
|
A:YJS201
|
1.8
|
18.9
|
1.0
|
H111
|
A:YJS201
|
2.5
|
21.4
|
1.0
|
C39
|
A:YJS201
|
2.7
|
20.1
|
1.0
|
C10
|
A:YJS201
|
2.7
|
19.1
|
1.0
|
HB3
|
A:ASN21
|
2.8
|
16.2
|
1.0
|
H391
|
A:YJS201
|
2.8
|
24.1
|
1.0
|
HD21
|
A:LEU25
|
2.9
|
19.5
|
1.0
|
N11
|
A:YJS201
|
3.0
|
17.8
|
1.0
|
HG
|
A:LEU25
|
3.0
|
17.8
|
1.0
|
HD11
|
A:LEU25
|
3.1
|
19.2
|
1.0
|
CG
|
A:LEU25
|
3.6
|
14.8
|
1.0
|
CD2
|
A:LEU25
|
3.6
|
16.2
|
1.0
|
CB
|
A:ASN21
|
3.7
|
13.5
|
1.0
|
CD1
|
A:LEU25
|
3.8
|
16.0
|
1.0
|
O
|
A:ASN21
|
3.8
|
14.5
|
1.0
|
N40
|
A:YJS201
|
4.0
|
19.4
|
1.0
|
HD23
|
A:LEU25
|
4.0
|
19.5
|
1.0
|
C09
|
A:YJS201
|
4.0
|
19.4
|
1.0
|
HD12
|
A:LEU25
|
4.2
|
19.2
|
1.0
|
CG
|
A:ASN21
|
4.2
|
15.5
|
1.0
|
HA
|
A:ASN21
|
4.3
|
16.4
|
1.0
|
C
|
A:ASN21
|
4.3
|
13.0
|
1.0
|
HB2
|
A:ASN21
|
4.3
|
16.2
|
1.0
|
C12
|
A:YJS201
|
4.3
|
18.3
|
1.0
|
CA
|
A:ASN21
|
4.3
|
13.7
|
1.0
|
HD22
|
A:LEU25
|
4.4
|
19.5
|
1.0
|
HD22
|
A:ASN21
|
4.4
|
18.7
|
1.0
|
C08
|
A:YJS201
|
4.5
|
20.3
|
1.0
|
H141
|
A:YJS201
|
4.5
|
20.3
|
1.0
|
ND2
|
A:ASN21
|
4.5
|
15.6
|
1.0
|
HD13
|
A:LEU25
|
4.6
|
19.2
|
1.0
|
OD1
|
A:ASN21
|
4.7
|
17.0
|
1.0
|
H091
|
A:YJS201
|
4.8
|
23.3
|
1.0
|
HB2
|
A:ARG24
|
4.9
|
24.0
|
1.0
|
H
|
A:LEU25
|
5.0
|
19.2
|
1.0
|
C14
|
A:YJS201
|
5.0
|
16.9
|
1.0
|
|
Reference:
D.A.Kuntz,
G.G.Prive.
Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029 To Be Published.
Page generated: Tue Jul 30 00:18:29 2024
|