Chlorine in PDB 7m0h: Dhp B in Complex with 4-Chlorophenol Ligand

Protein crystallography data

The structure of Dhp B in Complex with 4-Chlorophenol Ligand, PDB code: 7m0h was solved by L.M.Carey, R.A.Ghiladi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.26 / 1.91
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.58, 67.384, 67.699, 90, 90, 90
R / Rfree (%) 18.5 / 24.5

Other elements in 7m0h:

The structure of Dhp B in Complex with 4-Chlorophenol Ligand also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dhp B in Complex with 4-Chlorophenol Ligand (pdb code 7m0h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Dhp B in Complex with 4-Chlorophenol Ligand, PDB code: 7m0h:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7m0h

Go back to Chlorine Binding Sites List in 7m0h
Chlorine binding site 1 out of 2 in the Dhp B in Complex with 4-Chlorophenol Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dhp B in Complex with 4-Chlorophenol Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:27.7
occ:0.80
CL9 A:4CH203 0.0 27.7 0.8
C4 A:4CH203 1.7 19.9 0.8
C5 A:4CH203 2.7 19.5 0.8
C3 A:4CH203 2.7 19.2 0.8
CE1 A:PHE21 3.7 13.9 1.0
CD1 A:PHE21 3.7 17.0 1.0
C1C A:HEM201 3.8 22.9 1.0
CG1 A:VAL59 3.9 13.4 1.0
C2C A:HEM201 4.0 19.4 1.0
C6 A:4CH203 4.0 26.0 0.8
C2 A:4CH203 4.0 19.1 0.8
NC A:HEM201 4.0 14.4 1.0
CHC A:HEM201 4.2 15.9 1.0
CD2 A:LEU100 4.3 20.0 1.0
C3C A:HEM201 4.3 22.2 1.0
C4C A:HEM201 4.3 24.0 1.0
CD1 A:LEU100 4.5 14.3 1.0
C1 A:4CH203 4.5 19.7 0.8
CZ A:PHE21 4.5 15.4 1.0
CMC A:HEM201 4.5 15.8 1.0
CG2 A:VAL59 4.6 17.9 1.0
C4B A:HEM201 4.6 18.1 1.0
CZ A:PHE35 4.6 22.4 1.0
CG A:PHE21 4.7 16.1 1.0
CB A:VAL59 4.7 15.2 1.0
NB A:HEM201 4.9 17.4 1.0
FE A:HEM201 4.9 18.8 1.0
CG A:LEU100 5.0 17.6 1.0

Chlorine binding site 2 out of 2 in 7m0h

Go back to Chlorine Binding Sites List in 7m0h
Chlorine binding site 2 out of 2 in the Dhp B in Complex with 4-Chlorophenol Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dhp B in Complex with 4-Chlorophenol Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:27.2
occ:0.93
CL9 B:4CH203 0.0 27.2 0.9
C4 B:4CH203 1.7 25.0 0.9
C5 B:4CH203 2.7 25.8 0.9
C3 B:4CH203 2.7 20.6 0.9
CE1 B:PHE21 3.6 14.3 1.0
CD1 B:PHE21 3.6 18.7 1.0
CG1 B:VAL59 3.8 16.8 1.0
C6 B:4CH203 4.0 19.2 0.9
C1C B:HEM201 4.0 16.1 1.0
C2 B:4CH203 4.0 18.7 0.9
NC B:HEM201 4.2 16.9 1.0
CD2 B:LEU100 4.2 19.8 1.0
C2C B:HEM201 4.2 16.0 1.0
CHC B:HEM201 4.3 17.7 1.0
CD1 B:LEU100 4.3 17.6 1.0
CG2 B:VAL59 4.4 16.0 1.0
C4C B:HEM201 4.5 22.9 1.0
CZ B:PHE21 4.5 17.4 1.0
C1 B:4CH203 4.5 25.6 0.9
C3C B:HEM201 4.5 22.8 1.0
CB B:VAL59 4.6 15.8 1.0
CG B:PHE21 4.6 20.1 1.0
C4B B:HEM201 4.7 17.1 1.0
CMC B:HEM201 4.8 20.0 1.0
CZ B:PHE35 4.8 14.4 1.0
CG B:LEU100 4.9 20.2 1.0
CE2 B:PHE60 4.9 12.5 1.0
NB B:HEM201 5.0 14.6 1.0

Reference:

L.M.Carey, R.A.Ghiladi. Mechanistic and Structural Studies of 2,4-Dihalophenol: Bridging the Functional Gap Between Reactivity and Inhibition in Dehaloperoxidase To Be Published.
Page generated: Tue Apr 4 20:48:22 2023

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