Chlorine in PDB 7m3k: Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308

Enzymatic activity of Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308

All present enzymatic activity of Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308:
4.2.1.6;

Protein crystallography data

The structure of Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308, PDB code: 7m3k was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.24 / 2.30
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 144.95, 144.95, 167.57, 90, 90, 120
R / Rfree (%) 18 / 20.8

Other elements in 7m3k:

The structure of Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308 (pdb code 7m3k). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308, PDB code: 7m3k:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7m3k

Go back to Chlorine Binding Sites List in 7m3k
Chlorine binding site 1 out of 3 in the Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:40.8
occ:0.50
 NH1 A:ARG272 2.8 37.4 1.0
NH2 A:ARG272 3.3 43.0 1.0
CZ A:ARG272 3.5 39.2 1.0
CE1 A:HIS347 4.0 44.4 1.0
O A:HOH966 4.2 49.2 1.0
O A:GLY344 4.3 42.0 1.0
CD2 A:LEU345 4.5 43.5 1.0
ND1 A:HIS347 4.6 47.6 1.0
CA A:LEU345 4.7 41.3 1.0
NE2 A:HIS347 4.8 44.9 1.0
NE A:ARG272 4.8 42.3 1.0
O A:LEU345 5.0 44.4 1.0
C A:LEU345 5.0 44.4 1.0

Chlorine binding site 2 out of 3 in 7m3k

Go back to Chlorine Binding Sites List in 7m3k
Chlorine binding site 2 out of 3 in the Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:77.1
occ:1.00
 O A:HOH1047 3.0 48.9 1.0
CG A:GLU87 4.1 29.7 1.0
C A:PHE88 4.2 31.5 1.0
N A:PRO89 4.3 29.8 1.0
CD A:PRO89 4.3 29.3 1.0
CG A:GLN55 4.3 30.4 1.0
CA A:PHE88 4.4 29.5 1.0
CB A:GLN55 4.4 32.3 1.0
OE2 A:GLU87 4.4 32.3 1.0
CD A:GLU87 4.4 36.3 1.0
N A:PHE88 4.5 28.4 1.0
O A:GLU87 4.7 33.5 1.0
C A:GLU87 4.7 32.7 1.0
O A:PHE88 4.7 30.1 1.0
CB A:PRO89 4.7 30.1 1.0
CA A:PRO89 4.8 30.9 1.0
CG A:PRO89 4.9 32.8 1.0
CB A:GLU87 4.9 30.8 1.0

Chlorine binding site 3 out of 3 in 7m3k

Go back to Chlorine Binding Sites List in 7m3k
Chlorine binding site 3 out of 3 in the Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:53.0
occ:0.50
 O A:HOH1041 2.4 49.7 1.0
O A:HOH999 2.7 51.8 1.0
O A:HOH1036 3.8 63.8 1.0
O A:HOH1017 3.9 44.7 1.0
OE2 A:GLU325 4.0 35.0 1.0
ND2 A:ASN159 4.0 41.7 1.0
O A:HOH859 4.3 37.6 1.0
OE1 A:GLU325 4.3 37.9 1.0
CD A:GLU325 4.4 35.4 1.0
CG A:ASN159 4.6 39.2 1.0
CB A:ASN159 4.6 38.1 1.0
O A:HOH945 5.0 48.4 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Galactonate Dehydratase From Brucella Melitensis Biovar Abortus 2308 To Be Published.
Page generated: Sat Apr 17 15:14:56 2021

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