Chlorine in PDB 7m8z: Crystal Structure of the Sars-Cov-2(2019-Ncov) Main Protease in Complex with Compound 29

Enzymatic activity of Crystal Structure of the Sars-Cov-2(2019-Ncov) Main Protease in Complex with Compound 29

All present enzymatic activity of Crystal Structure of the Sars-Cov-2(2019-Ncov) Main Protease in Complex with Compound 29:
3.4.22.69;

Protein crystallography data

The structure of Crystal Structure of the Sars-Cov-2(2019-Ncov) Main Protease in Complex with Compound 29, PDB code: 7m8z was solved by M.G.Deshmukh, J.A.Ippolito, C.H.Zhang, W.L.Jorgensen, K.S.Anderson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.76 / 1.79
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 97.711, 81.57, 54.567, 90, 116.68, 90
R / Rfree (%) 19.8 / 24

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Sars-Cov-2(2019-Ncov) Main Protease in Complex with Compound 29 (pdb code 7m8z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Sars-Cov-2(2019-Ncov) Main Protease in Complex with Compound 29, PDB code: 7m8z:

Chlorine binding site 1 out of 1 in 7m8z

Go back to Chlorine Binding Sites List in 7m8z
Chlorine binding site 1 out of 1 in the Crystal Structure of the Sars-Cov-2(2019-Ncov) Main Protease in Complex with Compound 29


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Sars-Cov-2(2019-Ncov) Main Protease in Complex with Compound 29 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:41.8
occ:1.00
 CL1 A:YTV401 0.0 41.8 1.0
C5 A:YTV401 1.8 36.8 1.0
C6 A:YTV401 2.7 36.0 1.0
C4 A:YTV401 2.8 30.4 1.0
H2 A:YTV401 2.8 43.3 1.0
H1 A:YTV401 2.9 36.5 1.0
C A:ASP187 3.4 32.8 1.0
O A:ASP187 3.5 34.1 1.0
CB A:HIS41 3.7 30.4 1.0
CD2 A:HIS41 3.7 27.8 1.0
CA A:ASP187 3.7 26.4 1.0
CB A:ASP187 3.7 27.6 1.0
N A:ARG188 3.8 29.1 1.0
CG A:HIS41 3.8 28.0 1.0
C7 A:YTV401 4.0 37.6 1.0
C3 A:YTV401 4.1 28.3 1.0
OH A:TYR54 4.1 33.9 1.0
CA A:ARG188 4.1 37.4 1.0
CE A:MET49 4.2 58.3 1.0
SD A:MET49 4.5 69.5 1.0
C13 A:YTV401 4.6 33.3 1.0
NE2 A:HIS41 4.6 28.9 1.0
ND1 A:HIS41 4.6 31.1 1.0
C A:ARG188 4.6 39.8 1.0
SD A:MET165 4.7 33.6 1.0
CG A:ASP187 4.9 28.5 1.0
O A:HOH569 5.0 24.4 1.0
O A:ARG188 5.0 33.4 1.0

Reference:

M.G.Deshmukh, J.A.Ippolito, C.-H.Zhang, E.A.Stone, R.A.Reilly, S.J.Miller, W.L.Jorgensen, K.S.Anderson. Structure-Guided Design of A Perampanel-Derived Pharmacophore Targeting the Sars-Cov-2 Main Protease Structure 2021.
ISSN: ISSN 0969-2126
DOI: 10.1016/J.STR.2021.06.002
Page generated: Sat Jul 10 12:55:21 2021

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