Chlorine in PDB 7mfp: Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine

Protein crystallography data

The structure of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine, PDB code: 7mfp was solved by C.A.Seltzner, J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.72 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 91.033, 108.548, 145.514, 90, 90, 90
R / Rfree (%) 17.2 / 21.9

Other elements in 7mfp:

The structure of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine (pdb code 7mfp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine, PDB code: 7mfp:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 7mfp

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Chlorine binding site 1 out of 8 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:15.3
occ:1.00
 O A:HOH592 3.1 8.9 1.0
ND2 A:ASN247 3.2 12.3 1.0
ND2 A:ASN246 3.4 21.1 1.0
O A:HOH677 3.5 10.8 1.0
O A:HOH643 3.5 10.6 1.0
CB A:ASN246 3.7 16.9 1.0
O A:LYS13 3.7 10.7 1.0
CD1 A:TYR243 3.9 8.7 1.0
CA A:TYR243 4.1 9.6 1.0
CG A:ASN246 4.1 19.4 1.0
CB A:ASP15 4.3 11.3 1.0
O A:SER242 4.4 9.8 1.0
CG A:ASN247 4.4 12.3 1.0
N A:ASP15 4.5 10.7 1.0
CE1 A:TYR243 4.6 8.6 1.0
O A:TYR243 4.6 11.0 1.0
N A:TYR243 4.7 9.6 1.0
CG A:TYR243 4.8 8.7 1.0
CB A:TYR243 4.8 9.0 1.0
OD1 A:ASN247 4.8 12.0 1.0
C A:SER242 4.8 9.7 1.0
O A:HOH572 4.8 20.9 1.0
C A:TYR243 4.9 10.1 1.0
CA A:ASP15 5.0 11.0 1.0
C A:LYS13 5.0 11.3 1.0
OG A:SER242 5.0 8.1 1.0

Chlorine binding site 2 out of 8 in 7mfp

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Chlorine binding site 2 out of 8 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:23.9
occ:1.00
 N A:LEU166 3.1 18.4 1.0
N A:LYS278 3.2 19.9 1.0
O A:HOH588 3.4 26.4 1.0
O A:HOH560 3.5 34.7 1.0
CB A:LYS278 3.6 28.8 1.0
CA A:LEU166 3.9 17.6 1.0
CA A:TYR165 3.9 16.3 1.0
CA A:LYS278 4.0 23.5 1.0
C A:TYR165 4.0 17.8 1.0
CA A:SER277 4.0 15.8 1.0
C A:SER277 4.0 17.3 1.0
O A:PHE164 4.1 16.0 1.0
CG A:LYS278 4.1 33.5 1.0
CD2 A:LEU166 4.1 20.2 1.0
O A:HIS276 4.2 17.8 1.0
O A:HOH638 4.2 22.5 1.0
CG A:LEU166 4.5 19.7 1.0
CD1 A:TYR165 4.6 16.2 1.0
N A:TYR165 4.7 15.9 1.0
C A:PHE164 4.7 15.9 1.0
CB A:SER277 4.8 14.5 1.0
CB A:LEU166 4.8 18.7 1.0
N A:GLY167 4.8 17.5 1.0
CG A:TYR165 4.9 15.9 1.0
CB A:TYR165 4.9 15.9 1.0
C A:LEU166 5.0 17.5 1.0
CD A:LYS278 5.0 38.6 1.0

Chlorine binding site 3 out of 8 in 7mfp

Go back to Chlorine Binding Sites List in 7mfp
Chlorine binding site 3 out of 8 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:16.5
occ:1.00
 ND2 B:ASN247 3.1 10.9 1.0
O B:HOH566 3.1 4.2 1.0
ND2 B:ASN246 3.3 10.7 1.0
O B:HOH724 3.4 16.2 1.0
O B:HOH656 3.5 12.9 1.0
CB B:ASN246 3.6 10.7 1.0
CD1 B:TYR243 3.8 8.9 1.0
O B:LYS13 3.8 10.6 1.0
CG B:ASN246 3.9 11.7 1.0
CA B:TYR243 4.1 7.9 1.0
CG B:ASN247 4.3 11.6 1.0
CE1 B:TYR243 4.4 9.2 1.0
CB B:ASP15 4.4 8.8 1.0
N B:ASP15 4.4 9.3 1.0
O B:SER242 4.4 6.0 1.0
OD1 B:ASN247 4.7 10.7 1.0
CG B:TYR243 4.7 8.5 1.0
O B:TYR243 4.7 8.4 1.0
O B:HOH696 4.7 19.8 1.0
CB B:TYR243 4.8 8.3 1.0
N B:TYR243 4.8 7.3 1.0
C B:SER242 4.8 7.0 1.0
OG B:SER242 4.9 6.7 1.0
C B:TYR243 4.9 8.1 1.0
CA B:ASP15 5.0 8.9 1.0

Chlorine binding site 4 out of 8 in 7mfp

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Chlorine binding site 4 out of 8 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:27.2
occ:1.00
 N B:LEU166 3.1 14.0 1.0
CG B:LYS278 3.2 34.2 1.0
N B:LYS278 3.2 20.3 1.0
O B:HOH842 3.6 8.7 0.5
CB B:LYS278 3.6 27.8 1.0
CA B:TYR165 3.8 13.3 1.0
CD2 B:LEU166 3.8 19.8 1.0
C B:TYR165 3.9 13.0 1.0
CA B:LEU166 4.0 15.3 1.0
CA B:SER277 4.0 16.9 1.0
CA B:LYS278 4.0 22.6 1.0
C B:SER277 4.0 17.9 1.0
O B:PHE164 4.0 12.7 1.0
O B:HOH642 4.1 18.9 1.0
O B:HIS276 4.2 18.7 1.0
CD1 B:TYR165 4.5 13.7 1.0
CG B:LEU166 4.5 17.8 1.0
CD B:LYS278 4.6 38.8 1.0
N B:TYR165 4.6 12.2 1.0
C B:PHE164 4.7 11.4 1.0
CB B:SER277 4.7 14.7 1.0
CG B:TYR165 4.8 13.4 1.0
CB B:TYR165 4.8 13.2 1.0
O B:HOH842 4.8 7.2 0.5
CB B:LEU166 4.9 17.0 1.0
CE B:LYS278 4.9 42.6 1.0
N B:GLY167 5.0 15.2 1.0

Chlorine binding site 5 out of 8 in 7mfp

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Chlorine binding site 5 out of 8 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl402

b:25.6
occ:1.00
 O C:HOH657 3.0 7.7 1.0
O C:HOH674 3.2 27.8 1.0
ND2 C:ASN247 3.3 12.5 1.0
ND2 C:ASN246 3.5 15.8 1.0
O C:HOH701 3.5 11.2 1.0
O C:LYS13 3.5 12.4 1.0
CB C:ASN246 3.8 16.4 1.0
CD1 C:TYR243 3.9 9.0 1.0
CA C:TYR243 4.1 10.8 1.0
CG C:ASN246 4.1 16.2 1.0
N C:ASP15 4.2 11.7 1.0
CB C:ASP15 4.2 12.2 1.0
O C:SER242 4.4 10.9 1.0
CG C:ASN247 4.5 13.5 1.0
CE1 C:TYR243 4.5 8.9 1.0
O C:TYR243 4.6 11.5 1.0
N C:TYR243 4.7 10.4 1.0
CB C:TYR243 4.7 9.9 1.0
C C:LYS13 4.7 12.8 1.0
CG C:TYR243 4.7 9.4 1.0
C C:SER242 4.8 10.8 1.0
CA C:ASP15 4.8 11.6 1.0
O C:HOH721 4.8 29.6 1.0
C C:PRO14 4.9 11.7 1.0
C C:TYR243 4.9 11.2 1.0
OD1 C:ASN247 5.0 13.4 1.0

Chlorine binding site 6 out of 8 in 7mfp

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Chlorine binding site 6 out of 8 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:28.2
occ:1.00
 N C:LEU166 3.1 17.6 1.0
N C:LYS278 3.2 19.1 1.0
CG C:LYS278 3.5 33.3 1.0
CB C:LYS278 3.7 26.8 1.0
CA C:TYR165 3.7 14.6 1.0
O C:HOH742 3.8 24.6 1.0
C C:TYR165 3.9 16.2 1.0
CA C:LEU166 3.9 18.3 1.0
O C:HOH648 4.0 20.5 1.0
CA C:SER277 4.0 16.0 1.0
C C:SER277 4.0 16.8 1.0
O C:PHE164 4.0 15.3 1.0
CA C:LYS278 4.1 21.9 1.0
O C:HIS276 4.1 18.7 1.0
CD2 C:LEU166 4.1 21.0 1.0
CD C:LYS278 4.2 38.3 1.0
CE C:LYS278 4.2 42.4 1.0
NZ C:LYS278 4.4 44.5 1.0
N C:TYR165 4.5 14.6 1.0
CG C:LEU166 4.6 20.5 1.0
C C:PHE164 4.6 13.8 1.0
CD1 C:TYR165 4.7 14.8 1.0
CB C:TYR165 4.8 14.6 1.0
CB C:SER277 4.8 15.6 1.0
CB C:LEU166 4.9 18.3 1.0
N C:GLY167 4.9 18.8 1.0
CG C:TYR165 4.9 14.6 1.0
C C:HIS276 5.0 17.3 1.0
C C:LEU166 5.0 18.0 1.0

Chlorine binding site 7 out of 8 in 7mfp

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Chlorine binding site 7 out of 8 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl402

b:16.8
occ:1.00
 O D:HOH537 3.2 9.2 1.0
ND2 D:ASN247 3.2 11.6 1.0
ND2 D:ASN246 3.3 11.7 1.0
O D:HOH655 3.3 24.4 1.0
O D:HOH743 3.4 9.6 1.0
CB D:ASN246 3.6 10.9 1.0
O D:LYS13 3.8 10.8 1.0
CG D:ASN246 3.9 11.6 1.0
CD1 D:TYR243 4.0 9.0 1.0
CA D:TYR243 4.2 9.6 1.0
CB D:ASP15 4.3 13.9 1.0
CG D:ASN247 4.3 11.6 1.0
N D:ASP15 4.4 12.2 1.0
O D:SER242 4.5 9.7 1.0
CE1 D:TYR243 4.5 8.9 1.0
O D:HOH665 4.6 24.1 1.0
OD1 D:ASN247 4.7 12.3 1.0
N D:TYR243 4.7 9.8 1.0
O D:TYR243 4.7 9.1 1.0
CG D:TYR243 4.8 9.2 1.0
OG D:SER242 4.8 10.2 1.0
C D:SER242 4.9 10.0 1.0
CB D:TYR243 4.9 9.2 1.0
CA D:ASP15 4.9 12.8 1.0
C D:TYR243 5.0 9.8 1.0
C D:LYS13 5.0 12.1 1.0

Chlorine binding site 8 out of 8 in 7mfp

Go back to Chlorine Binding Sites List in 7mfp
Chlorine binding site 8 out of 8 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:20.4
occ:1.00
 N D:LEU166 3.1 15.1 1.0
N D:LYS278 3.3 17.9 1.0
O D:HOH599 3.6 25.2 1.0
O D:HOH598 3.6 29.8 1.0
CB D:LYS278 3.8 27.7 1.0
CA D:LEU166 3.8 15.8 1.0
CA D:TYR165 3.9 12.0 1.0
CG D:LYS278 3.9 34.0 1.0
C D:TYR165 4.0 12.9 1.0
CA D:SER277 4.0 14.4 1.0
C D:SER277 4.1 15.7 1.0
CA D:LYS278 4.1 21.7 1.0
O D:PHE164 4.1 11.5 1.0
CD2 D:LEU166 4.2 20.6 1.0
O D:HOH658 4.2 26.0 1.0
O D:HIS276 4.2 14.3 1.0
CG D:LEU166 4.6 19.6 1.0
N D:TYR165 4.7 11.6 1.0
C D:PHE164 4.7 10.9 1.0
N D:GLY167 4.8 13.7 1.0
CD1 D:TYR165 4.8 10.0 1.0
CB D:SER277 4.8 13.9 1.0
CB D:LEU166 4.8 16.9 1.0
C D:LEU166 4.9 14.6 1.0
CB D:TYR165 4.9 11.0 1.0
CG D:TYR165 4.9 10.7 1.0
N D:SER277 5.0 13.3 1.0

Reference:

C.A.Seltzner, J.D.Ferek, J.B.Thoden, H.M.Holden. Characterization of An Aminotransferase From Acanthamoeba Polyphaga Mimivirus To Be Published.
Page generated: Tue Jul 30 00:29:02 2024

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