Chlorine in PDB 7mk3: Crystal Structure of NPR1

Protein crystallography data

The structure of Crystal Structure of NPR1, PDB code: 7mk3 was solved by J.Cheng, Q.Wu, P.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.42 / 3.06
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.98, 78.98, 395.37, 90, 90, 90
R / Rfree (%) 24.4 / 27

Other elements in 7mk3:

The structure of Crystal Structure of NPR1 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of NPR1 (pdb code 7mk3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of NPR1, PDB code: 7mk3:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7mk3

Go back to Chlorine Binding Sites List in 7mk3
Chlorine binding site 1 out of 5 in the Crystal Structure of NPR1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of NPR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:99.1
occ:1.00
CB A:CYS156 3.5 91.4 1.0
N A:CYS156 3.8 91.1 1.0
SG A:CYS156 3.9 117.0 1.0
CA A:CYS156 4.2 85.3 1.0
C A:CYS155 4.8 91.8 1.0
O A:ASN154 4.9 94.2 1.0
CA A:CYS155 4.9 87.9 1.0

Chlorine binding site 2 out of 5 in 7mk3

Go back to Chlorine Binding Sites List in 7mk3
Chlorine binding site 2 out of 5 in the Crystal Structure of NPR1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of NPR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:109.6
occ:1.00
CB A:ASN154 4.3 93.6 1.0
O A:ASN154 4.4 94.2 1.0
C A:ASN154 4.8 92.1 1.0

Chlorine binding site 3 out of 5 in 7mk3

Go back to Chlorine Binding Sites List in 7mk3
Chlorine binding site 3 out of 5 in the Crystal Structure of NPR1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of NPR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl607

b:107.1
occ:1.00
O A:GLU153 3.8 96.9 1.0
CB A:GLU153 3.8 107.8 1.0
CG A:GLU153 4.2 117.2 1.0
CA A:GLU153 4.4 98.5 1.0
CD A:GLU153 4.5 146.6 1.0
OE1 A:GLU153 4.5 152.5 1.0
C A:GLU153 4.5 96.7 1.0

Chlorine binding site 4 out of 5 in 7mk3

Go back to Chlorine Binding Sites List in 7mk3
Chlorine binding site 4 out of 5 in the Crystal Structure of NPR1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of NPR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl608

b:109.1
occ:1.00
CE A:MET338 3.4 104.8 1.0
OD1 A:ASP201 3.6 90.8 1.0
OD2 A:ASP201 3.8 93.0 1.0
CG A:ASP201 4.1 92.5 1.0
CB A:ALA372 4.5 86.4 1.0
CB A:ARG161 4.6 87.0 1.0
CG1 A:VAL198 4.7 108.4 1.0
NH1 A:ARG161 4.8 105.0 1.0
CA A:ALA372 4.8 82.4 1.0
CG2 A:ILE368 4.9 88.9 1.0
SD A:MET338 4.9 98.5 1.0
CG A:ARG161 5.0 82.6 1.0
CG A:MET338 5.0 94.4 1.0

Chlorine binding site 5 out of 5 in 7mk3

Go back to Chlorine Binding Sites List in 7mk3
Chlorine binding site 5 out of 5 in the Crystal Structure of NPR1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of NPR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl609

b:113.9
occ:1.00
OE2 B:GLU169 3.2 92.6 1.0
OH B:TYR121 3.6 101.8 1.0
CG B:ASP165 3.6 85.5 1.0
CB B:ASP165 3.7 80.0 1.0
CG B:GLU169 3.7 91.3 1.0
OD1 B:ASP165 3.7 90.4 1.0
CE2 B:TYR121 3.8 100.7 1.0
CD B:GLU169 3.9 93.5 1.0
O B:ASP165 4.0 89.1 1.0
CZ B:TYR121 4.1 100.4 1.0
OD2 B:ASP165 4.2 87.0 1.0
CA B:ASP165 4.2 81.0 1.0
C3 B:GOL603 4.2 116.4 1.0
C B:ASP165 4.4 82.4 1.0
O B:GLU122 4.6 108.8 1.0
C1 B:GOL603 4.8 104.0 1.0
CD2 B:TYR121 4.8 103.2 1.0

Reference:

S.Kumar, R.Zavaliev, Q.Wu, Y.Zhou, J.Cheng, L.Dillard, J.Powers, J.Withers, J.Zhao, Z.Guan, M.J.Borgnia, A.Bartesaghi, X.Dong, P.Zhou. Structural Basis of NPR1 in Activating Plant Immunity. Nature V. 605 561 2022.
ISSN: ESSN 1476-4687
PubMed: 35545668
DOI: 10.1038/S41586-022-04699-W
Page generated: Tue Apr 4 20:49:04 2023

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