Chlorine in PDB 7mmt: Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak)

Enzymatic activity of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak)

All present enzymatic activity of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak):
1.17.4.1;

Protein crystallography data

The structure of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak), PDB code: 7mmt was solved by G.M.Palowitch, A.K.Boal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.33 / 1.54
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.614, 46.721, 133.786, 90, 90.49, 90
R / Rfree (%) 18.4 / 20.7

Other elements in 7mmt:

The structure of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak) also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak) (pdb code 7mmt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak), PDB code: 7mmt:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7mmt

Go back to Chlorine Binding Sites List in 7mmt
Chlorine binding site 1 out of 4 in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:12.5
occ:1.00
 CU A:CU1401 2.6 10.9 0.9
OD1 A:ASP93 2.8 11.7 1.0
O A:HOH509 3.0 18.4 1.0
NE2 A:GLN88 3.2 11.3 1.0
ND1 A:HIS213 3.5 9.3 1.0
CB A:HIS213 3.5 9.6 1.0
CG A:ASP93 3.6 11.2 1.0
CL A:CL404 3.7 12.2 1.0
OD2 A:ASP93 3.7 11.9 1.0
CG A:HIS213 3.7 9.6 1.0
CG A:GLN88 3.9 10.7 1.0
CD2 A:PHE112 4.0 6.8 1.0
CD A:GLN88 4.1 11.2 1.0
CG A:PRO176 4.1 12.6 1.0
CD A:PRO176 4.4 12.7 1.0
O A:ALA172 4.4 14.6 1.0
CG2 A:VAL116 4.4 7.7 1.0
CB A:PHE112 4.4 6.7 1.0
CE1 A:HIS213 4.4 9.4 1.0
CG A:PHE112 4.6 6.8 1.0
CA A:HIS213 4.7 9.9 1.0
CB A:PRO176 4.7 12.5 1.0
CD2 A:HIS213 4.8 9.5 1.0
CE2 A:PHE112 4.8 6.8 1.0

Chlorine binding site 2 out of 4 in 7mmt

Go back to Chlorine Binding Sites List in 7mmt
Chlorine binding site 2 out of 4 in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:12.2
occ:1.00
 CU A:CU1401 2.2 10.9 0.9
NZ A:LYS210 3.1 12.9 1.0
O A:HOH571 3.3 21.0 1.0
CB A:PRO176 3.6 12.5 1.0
CL A:CL403 3.7 12.5 1.0
CG A:GLN88 3.7 10.7 1.0
CG2 A:VAL116 3.8 7.7 1.0
CD A:LYS210 3.8 12.8 1.0
CD A:PRO176 3.8 12.7 1.0
N A:PRO176 3.9 13.0 1.0
CA A:PRO176 3.9 12.5 1.0
CE A:LYS210 4.0 12.8 1.0
CG A:PRO176 4.0 12.6 1.0
ND1 A:HIS213 4.1 9.3 1.0
CG A:LYS210 4.2 12.5 1.0
CG A:MET175 4.2 17.6 1.0
NE2 A:GLN88 4.3 11.3 1.0
CG1 A:VAL116 4.4 7.8 1.0
CD A:GLN88 4.4 11.2 1.0
CB A:GLN88 4.4 10.2 1.0
C A:MET175 4.6 13.9 1.0
CB A:MET175 4.6 16.4 1.0
OD1 A:ASP85 4.7 11.2 1.0
CB A:VAL116 4.7 7.6 1.0
CB A:LYS210 4.9 11.7 1.0
CB A:HIS213 5.0 9.6 1.0
CE1 A:HIS213 5.0 9.4 1.0

Chlorine binding site 3 out of 4 in 7mmt

Go back to Chlorine Binding Sites List in 7mmt
Chlorine binding site 3 out of 4 in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:11.6
occ:1.00
 CU B:CU1401 2.2 11.0 0.9
NZ B:LYS210 3.2 12.2 1.0
O B:HOH589 3.4 25.7 1.0
CB B:PRO176 3.6 11.7 1.0
CL B:CL404 3.7 13.5 1.0
CD B:LYS210 3.7 12.3 1.0
CG B:GLN88 3.7 10.5 1.0
CD B:PRO176 3.8 11.8 1.0
CG2 B:VAL116 3.8 7.4 1.0
CA B:PRO176 3.9 11.8 1.0
N B:PRO176 3.9 11.9 1.0
CE B:LYS210 3.9 12.3 1.0
CG B:PRO176 4.0 11.7 1.0
ND1 B:HIS213 4.1 9.7 1.0
CG B:MET175 4.2 15.5 1.0
CG B:LYS210 4.2 12.0 1.0
NE2 B:GLN88 4.3 11.1 1.0
CD B:GLN88 4.4 10.8 1.0
CG1 B:VAL116 4.4 7.5 1.0
CB B:GLN88 4.5 10.2 1.0
C B:MET175 4.5 12.8 1.0
CB B:MET175 4.6 14.4 1.0
CB B:VAL116 4.8 7.4 1.0
OD1 B:ASP85 4.8 11.7 1.0
CB B:LYS210 4.9 11.4 1.0
CE1 B:HIS213 5.0 9.6 1.0
CB B:HIS213 5.0 9.6 1.0

Chlorine binding site 4 out of 4 in 7mmt

Go back to Chlorine Binding Sites List in 7mmt
Chlorine binding site 4 out of 4 in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Chloride Soak) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:13.5
occ:1.00
 CU B:CU1401 2.5 11.0 0.9
OD1 B:ASP93 2.8 11.2 1.0
O B:HOH520 2.9 17.2 1.0
NE2 B:GLN88 3.2 11.1 1.0
ND1 B:HIS213 3.4 9.7 1.0
CB B:HIS213 3.5 9.6 1.0
CG B:ASP93 3.7 10.7 1.0
CL B:CL403 3.7 11.6 1.0
CG B:HIS213 3.7 9.5 1.0
OD2 B:ASP93 3.7 10.9 1.0
CG B:GLN88 3.9 10.5 1.0
CD2 B:PHE112 4.0 7.3 1.0
CD B:GLN88 4.1 10.8 1.0
CG B:PRO176 4.1 11.7 1.0
CG2 B:VAL116 4.3 7.4 1.0
CE1 B:HIS213 4.4 9.6 1.0
CB B:PHE112 4.4 7.0 1.0
O B:ALA172 4.4 13.0 1.0
CD B:PRO176 4.4 11.8 1.0
CG B:PHE112 4.5 7.2 1.0
CA B:HIS213 4.7 9.8 1.0
CB B:PRO176 4.7 11.7 1.0
CD2 B:HIS213 4.8 9.6 1.0
CE2 B:PHE112 4.8 7.3 1.0

Reference:

G.M.Palowitch, A.K.Boal. Ribonucleotide Reductase To Be Published.
Page generated: Tue Jul 30 00:33:09 2024

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