Chlorine in PDB 7n3d: Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2

The structure of Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2, PDB code: 7n3d was solved by Y.Kim, N.Maltseva, C.Tesar, R.Jedrzejczak, H.Dugan, C.Stamper, P.Wilson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.51 / 1.53
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	50.927, 67.318, 86.087, 90, 106.64, 90
R / Rfree (%)	15.7 / 19

The binding sites of Chlorine atom in the Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2 (pdb code 7n3d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2, PDB code: 7n3d:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2 within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl302 b:48.9 occ:1.00 N H:ALA87 3.2 26.8 1.0 CA H:THR86 3.7 26.8 1.0 CB H:THR86 3.9 28.8 1.0 C H:THR86 3.9 26.4 1.0 CB H:PRO14 4.0 27.2 1.0 CB H:ALA87 4.0 26.0 1.0 CG H:PRO14 4.2 28.0 1.0 CA H:ALA87 4.2 26.1 1.0 CG2 H:THR86 4.7 30.2 1.0 CG1 H:VAL120 4.8 23.6 1.0 OG1 H:THR86 5.0 29.3 1.0

Chlorine binding site 2 out of 6 in the Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2 within 5.0Å range: probe atom residue distance (Å) B Occ L:Cl403 b:29.3 occ:1.00 NH1 L:ARG61 3.3 22.8 1.0 N L:ARG61 3.4 20.9 1.0 CB L:ARG61 3.5 19.7 1.0 CG L:ARG61 3.6 19.1 1.0 O L:HOH597 3.7 42.8 1.0 CB L:PRO59 3.8 21.2 1.0 CD L:ARG61 3.9 19.6 1.0 N L:SER60 3.9 20.2 0.3 N L:SER60 4.0 19.3 0.7 CA L:ARG61 4.0 19.7 1.0 OG L:SER60 4.2 25.1 0.7 C L:SER60 4.3 20.9 0.7 CZ L:ARG61 4.3 22.5 1.0 C L:SER60 4.3 20.7 0.3 C L:PRO59 4.4 21.1 1.0 CA L:PRO59 4.5 21.9 1.0 CA L:SER60 4.5 20.8 0.3 NE L:ARG61 4.6 21.1 1.0 CA L:SER60 4.6 21.1 0.7 O L:HOH623 4.7 38.4 1.0 CB L:SER60 4.8 21.3 0.3

Chlorine binding site 3 out of 6 in the Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2 within 5.0Å range: probe atom residue distance (Å) B Occ L:Cl404 b:35.9 occ:1.00 N L:SER28 3.2 22.1 1.0 CA L:GLN27 3.6 23.7 1.0 CB L:GLN27 3.9 27.8 1.0 C L:GLN27 3.9 22.2 1.0 CB L:SER28 4.2 26.0 1.0 CA L:SER28 4.3 22.6 1.0 O L:SER26 4.9 22.1 1.0 N L:GLN27 4.9 21.7 1.0

Chlorine binding site 4 out of 6 in the Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2 within 5.0Å range: probe atom residue distance (Å) B Occ L:Cl405 b:68.9 occ:1.00 OG L:SER65 3.3 22.1 0.5 OG1 L:THR72 3.4 19.4 0.4 O L:ASP70 3.6 21.4 1.0 CA L:GLY66 3.7 20.9 1.0 OG1 L:THR72 3.8 21.1 0.6 N L:GLY66 3.8 21.3 1.0 O L:SER65 3.8 20.3 0.6 OG L:SER65 3.9 23.4 0.6 C L:SER65 3.9 20.8 0.6 C L:SER65 3.9 20.6 0.5 O L:SER65 4.0 20.2 0.5 CB L:THR72 4.1 19.2 0.4 CB L:SER65 4.1 21.7 0.5 CB L:SER65 4.2 22.7 0.6 CG2 L:THR72 4.2 20.1 0.6 N L:THR72 4.2 17.9 0.6 N L:THR72 4.3 18.6 0.4 O L:HOH522 4.3 27.6 1.0 C L:ASP70 4.4 19.7 1.0 OD2 L:ASP70 4.4 26.9 1.0 CA L:PHE71 4.4 17.1 1.0 C L:PHE71 4.4 18.8 1.0 CB L:THR72 4.5 19.8 0.6 CA L:SER65 4.7 21.3 0.6 N L:PHE71 4.7 17.3 1.0 CA L:SER65 4.7 20.9 0.5 CG L:ASP70 4.7 25.4 1.0 CA L:THR72 4.9 18.6 0.4 CA L:THR72 5.0 18.3 0.6

Chlorine binding site 5 out of 6 in the Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl305 b:70.8 occ:1.00 O C:ASP144 3.3 27.9 1.0 O C:HIS145 4.0 28.1 1.0 C C:HIS145 4.2 26.4 1.0 O C:ILE146 4.3 25.3 1.0 C C:ILE146 4.4 24.5 1.0 N C:GLY147 4.5 23.8 1.0 C C:ASP144 4.5 26.4 1.0 CA C:HIS145 4.6 25.8 1.0 O C:HOH463 4.6 40.9 1.0 CA C:GLY147 4.6 23.9 1.0 N C:ILE146 4.7 25.2 1.0

Chlorine binding site 6 out of 6 in the Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Human Fab S24-1564 in the Complex with the N- Teminal Domain of Nucleocapsid Protein From Sars Cov-2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl306 b:36.8 occ:1.00 N C:ASN126 3.2 27.6 1.0 CA C:ALA125 3.8 25.8 1.0 CB C:ASN126 4.0 33.8 1.0 C C:ALA125 4.0 26.0 1.0 CA C:ASN126 4.2 29.8 1.0 CB C:ALA125 4.4 26.4 1.0 O C:ASN126 4.5 31.0 1.0 O C:GLY124 4.8 25.6 1.0 C C:ASN126 4.8 29.7 1.0 N C:ALA125 4.9 25.3 1.0

Y.Kim, N.Maltseva, C.Tesar, R.Jedrzejczak, H.Dugan, C.Stamper, P.Wilson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Human Fab S24-1564 in the Complex with the N-Teminal Domain of Nucleocapsid Protein From Sars Cov-2 To Be Published.