Chlorine in PDB 7ncl: Glutathione-S-Transferase Glig Mutant E82Q
Protein crystallography data
The structure of Glutathione-S-Transferase Glig Mutant E82Q, PDB code: 7ncl
was solved by
M.Groll,
E.M.Huber,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.33,
85.27,
346.25,
90,
90,
90
|
R / Rfree (%)
|
17.5 /
22.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Glutathione-S-Transferase Glig Mutant E82Q
(pdb code 7ncl). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Glutathione-S-Transferase Glig Mutant E82Q, PDB code: 7ncl:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 7ncl
Go back to
Chlorine Binding Sites List in 7ncl
Chlorine binding site 1 out
of 5 in the Glutathione-S-Transferase Glig Mutant E82Q
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Glutathione-S-Transferase Glig Mutant E82Q within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:53.0
occ:1.00
|
NE2
|
A:GLN82
|
3.2
|
45.4
|
1.0
|
N
|
A:THR84
|
3.3
|
24.8
|
1.0
|
CB
|
A:GLN82
|
3.5
|
36.1
|
1.0
|
CB
|
A:THR84
|
3.6
|
25.6
|
1.0
|
O
|
A:HOH495
|
3.6
|
36.8
|
1.0
|
CG2
|
B:THR116
|
3.6
|
26.2
|
1.0
|
OG1
|
A:THR84
|
3.6
|
25.4
|
1.0
|
OG
|
A:SER83
|
3.6
|
28.0
|
1.0
|
N
|
A:SER83
|
3.6
|
27.9
|
1.0
|
C
|
A:GLN82
|
3.9
|
29.5
|
1.0
|
CB
|
B:ALA120
|
4.0
|
25.7
|
1.0
|
CA
|
A:GLN82
|
4.0
|
31.8
|
1.0
|
CG2
|
A:THR119
|
4.0
|
23.7
|
1.0
|
CA
|
A:THR84
|
4.0
|
25.3
|
1.0
|
CL
|
A:CL302
|
4.1
|
57.3
|
1.0
|
O
|
A:HOH419
|
4.1
|
34.0
|
1.0
|
CD
|
A:GLN82
|
4.2
|
44.8
|
1.0
|
C
|
A:SER83
|
4.3
|
26.1
|
1.0
|
CA
|
A:SER83
|
4.3
|
27.5
|
1.0
|
CG
|
A:GLN82
|
4.4
|
40.7
|
1.0
|
CB
|
A:SER83
|
4.6
|
27.7
|
1.0
|
O
|
A:GLN82
|
4.6
|
29.4
|
1.0
|
CG2
|
A:THR84
|
4.8
|
25.7
|
1.0
|
N
|
A:SER85
|
4.9
|
24.3
|
1.0
|
CB
|
A:THR119
|
5.0
|
23.9
|
1.0
|
OG1
|
A:THR119
|
5.0
|
24.4
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 7ncl
Go back to
Chlorine Binding Sites List in 7ncl
Chlorine binding site 2 out
of 5 in the Glutathione-S-Transferase Glig Mutant E82Q
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Glutathione-S-Transferase Glig Mutant E82Q within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:57.3
occ:1.00
|
OG
|
A:SER83
|
3.1
|
28.0
|
1.0
|
N
|
A:SER83
|
3.2
|
27.9
|
1.0
|
CB
|
A:SER83
|
3.5
|
27.7
|
1.0
|
CG
|
A:ASN27
|
3.6
|
30.4
|
1.0
|
CB
|
A:ASN27
|
3.7
|
29.5
|
1.0
|
O
|
A:HOH465
|
3.7
|
36.0
|
1.0
|
ND2
|
A:ASN27
|
3.8
|
30.4
|
1.0
|
CD
|
A:PRO65
|
3.9
|
25.8
|
1.0
|
CA
|
A:SER83
|
4.0
|
27.5
|
1.0
|
OD1
|
A:ASN27
|
4.0
|
31.8
|
1.0
|
CL
|
A:CL301
|
4.1
|
53.0
|
1.0
|
C
|
A:GLN82
|
4.2
|
29.5
|
1.0
|
CA
|
A:GLN82
|
4.2
|
31.8
|
1.0
|
NE2
|
A:GLN82
|
4.3
|
45.4
|
1.0
|
O
|
A:VAL64
|
4.5
|
28.3
|
1.0
|
CG
|
A:PRO65
|
4.7
|
25.5
|
1.0
|
N
|
A:PRO65
|
4.8
|
25.5
|
1.0
|
CA
|
A:ASN27
|
4.9
|
27.9
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 7ncl
Go back to
Chlorine Binding Sites List in 7ncl
Chlorine binding site 3 out
of 5 in the Glutathione-S-Transferase Glig Mutant E82Q
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Glutathione-S-Transferase Glig Mutant E82Q within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:46.1
occ:1.00
|
N
|
B:THR84
|
3.4
|
24.8
|
1.0
|
OG
|
B:SER83
|
3.6
|
27.9
|
1.0
|
CB
|
B:GLN82
|
3.6
|
37.0
|
1.0
|
N
|
B:SER83
|
3.6
|
27.6
|
1.0
|
CB
|
B:THR84
|
3.6
|
24.3
|
1.0
|
O
|
B:HOH456
|
3.6
|
31.4
|
1.0
|
OE1
|
B:GLN82
|
3.6
|
51.1
|
1.0
|
OG1
|
B:THR84
|
3.7
|
25.3
|
1.0
|
CG2
|
A:THR116
|
3.7
|
28.0
|
1.0
|
C
|
B:GLN82
|
3.9
|
29.6
|
1.0
|
CB
|
A:ALA120
|
4.0
|
26.5
|
1.0
|
CA
|
B:GLN82
|
4.0
|
32.8
|
1.0
|
CA
|
B:THR84
|
4.1
|
24.4
|
1.0
|
O
|
B:HOH430
|
4.2
|
37.9
|
1.0
|
CG2
|
B:THR119
|
4.3
|
25.0
|
1.0
|
C
|
B:SER83
|
4.3
|
26.6
|
1.0
|
CA
|
B:SER83
|
4.3
|
27.4
|
1.0
|
CL
|
B:CL302
|
4.4
|
61.2
|
1.0
|
CD
|
B:GLN82
|
4.5
|
46.8
|
1.0
|
CB
|
B:SER83
|
4.5
|
27.2
|
1.0
|
CG
|
B:GLN82
|
4.6
|
41.8
|
1.0
|
O
|
B:GLN82
|
4.7
|
28.5
|
1.0
|
CG2
|
B:THR84
|
4.9
|
23.5
|
1.0
|
N
|
B:SER85
|
5.0
|
22.5
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 7ncl
Go back to
Chlorine Binding Sites List in 7ncl
Chlorine binding site 4 out
of 5 in the Glutathione-S-Transferase Glig Mutant E82Q
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Glutathione-S-Transferase Glig Mutant E82Q within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:61.2
occ:1.00
|
N
|
B:SER83
|
3.2
|
27.6
|
1.0
|
OG
|
B:SER83
|
3.5
|
27.9
|
1.0
|
O
|
B:HOH422
|
3.5
|
35.2
|
1.0
|
CB
|
B:SER83
|
3.6
|
27.2
|
1.0
|
CG
|
B:ASN27
|
3.7
|
32.1
|
1.0
|
CB
|
B:ASN27
|
3.7
|
30.0
|
1.0
|
CD
|
B:PRO65
|
3.8
|
28.2
|
1.0
|
ND2
|
B:ASN27
|
3.9
|
31.7
|
1.0
|
CA
|
B:SER83
|
4.0
|
27.4
|
1.0
|
OD1
|
B:ASN27
|
4.0
|
33.9
|
1.0
|
CA
|
B:GLN82
|
4.1
|
32.8
|
1.0
|
C
|
B:GLN82
|
4.1
|
29.6
|
1.0
|
O
|
B:VAL64
|
4.2
|
28.5
|
1.0
|
CL
|
B:CL301
|
4.4
|
46.1
|
1.0
|
N
|
B:PRO65
|
4.7
|
27.3
|
1.0
|
CG
|
B:PRO65
|
4.7
|
27.3
|
1.0
|
C
|
B:VAL64
|
4.8
|
28.7
|
1.0
|
O
|
B:HOH474
|
4.8
|
43.1
|
1.0
|
OE1
|
B:GLN82
|
4.9
|
51.1
|
1.0
|
O
|
B:HOH444
|
5.0
|
31.3
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 7ncl
Go back to
Chlorine Binding Sites List in 7ncl
Chlorine binding site 5 out
of 5 in the Glutathione-S-Transferase Glig Mutant E82Q
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Glutathione-S-Transferase Glig Mutant E82Q within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl301
b:54.0
occ:1.00
|
N
|
C:SER83
|
3.2
|
29.4
|
1.0
|
OG
|
C:SER83
|
3.2
|
33.6
|
1.0
|
CB
|
C:SER83
|
3.5
|
31.5
|
1.0
|
CG
|
C:ASN27
|
3.7
|
32.1
|
1.0
|
CB
|
C:ASN27
|
3.8
|
30.6
|
1.0
|
O
|
C:HOH429
|
3.8
|
37.3
|
1.0
|
CA
|
C:SER83
|
3.9
|
30.5
|
1.0
|
CD
|
C:PRO65
|
4.0
|
26.3
|
1.0
|
OD1
|
C:ASN27
|
4.0
|
33.5
|
1.0
|
ND2
|
C:ASN27
|
4.1
|
33.0
|
1.0
|
C
|
C:GLN82
|
4.1
|
30.3
|
1.0
|
CA
|
C:GLN82
|
4.1
|
34.7
|
1.0
|
O
|
C:HOH493
|
4.2
|
33.2
|
1.0
|
O
|
C:VAL64
|
4.5
|
28.3
|
1.0
|
NE2
|
C:GLN82
|
4.8
|
52.2
|
1.0
|
CG
|
C:PRO65
|
4.8
|
25.7
|
1.0
|
O
|
C:HOH416
|
4.8
|
43.6
|
1.0
|
N
|
C:PRO65
|
4.8
|
26.0
|
1.0
|
CB
|
C:GLN82
|
5.0
|
39.4
|
1.0
|
|
Reference:
K.Scherlach,
W.Kuttenlochner,
D.H.Scharf,
A.A.Brakhage,
C.Hertweck,
M.Groll,
E.Huber.
Structural and Mechanistic Insights Into C-S Bond Formation in Gliotoxin. Angew.Chem.Int.Ed.Engl. 2021.
ISSN: ESSN 1521-3773
PubMed: 33909314
DOI: 10.1002/ANIE.202104372
Page generated: Tue Jul 30 00:49:53 2024
|