Chlorine in PDB 7nl8: Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide
Protein crystallography data
The structure of Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide, PDB code: 7nl8
was solved by
M.Gardonyi,
A.Heine,
G.Klebe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.56 /
1.59
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.53,
57.53,
159.52,
90,
90,
120
|
R / Rfree (%)
|
19.1 /
21.9
|
Other elements in 7nl8:
The structure of Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide
(pdb code 7nl8). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide, PDB code: 7nl8:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7nl8
Go back to
Chlorine Binding Sites List in 7nl8
Chlorine binding site 1 out
of 4 in the Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:39.0
occ:1.00
|
N
|
A:LEU121
|
3.2
|
31.6
|
1.0
|
C
|
A:ALA119
|
3.3
|
28.1
|
1.0
|
CA
|
A:ALA119
|
3.4
|
24.1
|
1.0
|
CB
|
A:LEU121
|
3.5
|
27.7
|
1.0
|
N
|
A:LYS122
|
3.5
|
28.9
|
1.0
|
N
|
A:PRO120
|
3.6
|
24.5
|
1.0
|
CA
|
A:LEU121
|
3.8
|
27.4
|
1.0
|
CB
|
A:ALA119
|
3.8
|
25.5
|
1.0
|
O
|
A:ALA119
|
3.8
|
27.3
|
1.0
|
CD
|
A:PRO120
|
3.8
|
27.9
|
1.0
|
CG
|
A:LEU121
|
4.0
|
34.7
|
1.0
|
CG
|
A:LYS122
|
4.1
|
29.2
|
1.0
|
C
|
A:LEU121
|
4.1
|
30.4
|
1.0
|
C
|
A:PRO120
|
4.2
|
28.4
|
1.0
|
CA
|
A:PRO120
|
4.5
|
26.4
|
1.0
|
CD1
|
A:LEU121
|
4.5
|
34.2
|
1.0
|
CB
|
A:LYS122
|
4.5
|
26.7
|
1.0
|
CG
|
A:PRO120
|
4.6
|
32.0
|
1.0
|
CA
|
A:LYS122
|
4.6
|
25.3
|
1.0
|
CE
|
A:LYS122
|
4.7
|
42.0
|
1.0
|
CD
|
A:LYS122
|
4.7
|
34.9
|
1.0
|
N
|
A:ALA119
|
4.8
|
26.8
|
1.0
|
O
|
A:LYS118
|
4.9
|
32.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7nl8
Go back to
Chlorine Binding Sites List in 7nl8
Chlorine binding site 2 out
of 4 in the Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:44.6
occ:1.00
|
O
|
A:HOH373
|
2.7
|
32.0
|
1.0
|
N
|
A:GLN88
|
3.2
|
28.8
|
1.0
|
C
|
A:GLN85
|
3.3
|
26.5
|
1.0
|
CG
|
A:GLN88
|
3.3
|
39.0
|
1.0
|
CA
|
A:GLN85
|
3.4
|
23.7
|
1.0
|
N
|
A:GLN87
|
3.5
|
26.2
|
1.0
|
CB
|
A:GLN85
|
3.6
|
26.2
|
1.0
|
CB
|
A:GLN88
|
3.6
|
29.0
|
1.0
|
O
|
A:GLN85
|
3.6
|
24.9
|
1.0
|
N
|
A:PHE86
|
3.7
|
26.3
|
1.0
|
CB
|
A:GLN87
|
3.9
|
29.8
|
1.0
|
CA
|
A:GLN87
|
4.0
|
27.1
|
1.0
|
CA
|
A:GLN88
|
4.0
|
27.6
|
1.0
|
C
|
A:GLN87
|
4.0
|
25.9
|
1.0
|
C
|
A:PHE86
|
4.4
|
30.0
|
1.0
|
CG
|
A:GLN85
|
4.5
|
31.3
|
1.0
|
CA
|
A:PHE86
|
4.6
|
28.7
|
1.0
|
O
|
A:HOH388
|
4.7
|
47.1
|
1.0
|
N
|
A:GLN85
|
4.8
|
26.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7nl8
Go back to
Chlorine Binding Sites List in 7nl8
Chlorine binding site 3 out
of 4 in the Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl201
b:32.9
occ:1.00
|
O
|
B:HOH353
|
2.8
|
33.5
|
1.0
|
O
|
B:HOH351
|
2.9
|
39.1
|
1.0
|
OG
|
B:SER134
|
3.0
|
28.4
|
1.0
|
N
|
B:TYR104
|
3.1
|
23.6
|
1.0
|
CB
|
B:TYR104
|
3.7
|
16.6
|
1.0
|
CB
|
B:SER134
|
3.8
|
26.8
|
1.0
|
CA
|
B:TYR104
|
3.9
|
17.9
|
1.0
|
OD1
|
B:ASP103
|
4.0
|
32.9
|
1.0
|
CB
|
B:ASP136
|
4.0
|
23.4
|
1.0
|
CD2
|
B:LEU139
|
4.0
|
23.4
|
1.0
|
C
|
B:ASP103
|
4.1
|
31.0
|
1.0
|
CA
|
B:ASP103
|
4.1
|
32.1
|
1.0
|
CD2
|
B:TYR104
|
4.1
|
28.8
|
1.0
|
O
|
B:ASN102
|
4.2
|
34.6
|
1.0
|
CA
|
B:SER134
|
4.3
|
24.5
|
1.0
|
CG
|
B:TYR104
|
4.4
|
19.4
|
1.0
|
N
|
B:THR105
|
4.4
|
21.1
|
1.0
|
C
|
B:TYR104
|
4.5
|
19.7
|
1.0
|
N
|
B:ASP136
|
4.6
|
25.9
|
1.0
|
N
|
B:ASN135
|
4.6
|
34.0
|
1.0
|
CG
|
B:ASP103
|
4.9
|
38.2
|
1.0
|
CA
|
B:ASP136
|
5.0
|
22.8
|
1.0
|
OG1
|
B:THR105
|
5.0
|
33.6
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7nl8
Go back to
Chlorine Binding Sites List in 7nl8
Chlorine binding site 4 out
of 4 in the Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Shortened Ipgc Variant in Complex with 3- Methylbenzohydrazide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl202
b:54.9
occ:1.00
|
N
|
B:LEU121
|
3.3
|
39.1
|
1.0
|
CB
|
B:LEU121
|
3.3
|
52.5
|
1.0
|
C
|
B:ALA119
|
3.5
|
35.9
|
1.0
|
N
|
B:LYS122
|
3.5
|
35.8
|
1.0
|
CA
|
B:ALA119
|
3.5
|
31.8
|
1.0
|
CA
|
B:LEU121
|
3.7
|
43.0
|
1.0
|
CB
|
B:ALA119
|
3.7
|
33.6
|
1.0
|
N
|
B:PRO120
|
3.8
|
37.4
|
1.0
|
O
|
B:ALA119
|
3.9
|
31.8
|
1.0
|
CG
|
B:LEU121
|
3.9
|
52.7
|
1.0
|
C
|
B:LEU121
|
4.1
|
35.3
|
1.0
|
CD
|
B:PRO120
|
4.1
|
40.0
|
1.0
|
CG
|
B:LYS122
|
4.2
|
35.0
|
1.0
|
C
|
B:PRO120
|
4.3
|
32.4
|
1.0
|
CB
|
B:LYS122
|
4.5
|
31.1
|
1.0
|
CA
|
B:LYS122
|
4.6
|
30.0
|
1.0
|
CA
|
B:PRO120
|
4.7
|
35.5
|
1.0
|
CG
|
B:PRO120
|
4.9
|
40.0
|
1.0
|
CD
|
B:LYS122
|
4.9
|
38.3
|
1.0
|
N
|
B:ALA119
|
4.9
|
32.8
|
1.0
|
|
Reference:
M.Gardonyi,
A.Heine,
G.Klebe.
Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Methylbenzohydrazide To Be Published.
Page generated: Tue Jul 30 00:55:55 2024
|