Chlorine in PDB 7nx9: Crystal Structure of the N501Y Mutant Receptor Binding Domain of Sars- Cov-2 Spike Glycoprotein in Complex with Covox-222 and EY6A Fabs

The structure of Crystal Structure of the N501Y Mutant Receptor Binding Domain of Sars- Cov-2 Spike Glycoprotein in Complex with Covox-222 and EY6A Fabs, PDB code: 7nx9 was solved by D.Zhou, J.Ren, D.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	79.31 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.302, 120.881, 210.167, 90, 90, 90
R / Rfree (%)	20 / 22.9

The binding sites of Chlorine atom in the Crystal Structure of the N501Y Mutant Receptor Binding Domain of Sars- Cov-2 Spike Glycoprotein in Complex with Covox-222 and EY6A Fabs (pdb code 7nx9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the N501Y Mutant Receptor Binding Domain of Sars- Cov-2 Spike Glycoprotein in Complex with Covox-222 and EY6A Fabs, PDB code: 7nx9:

Chlorine binding site 1 out of 1 in the Crystal Structure of the N501Y Mutant Receptor Binding Domain of Sars- Cov-2 Spike Glycoprotein in Complex with Covox-222 and EY6A Fabs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the N501Y Mutant Receptor Binding Domain of Sars- Cov-2 Spike Glycoprotein in Complex with Covox-222 and EY6A Fabs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:59.3 occ:1.00 OH A:TYR151 3.1 49.0 1.0 N A:VAL156 3.3 53.7 1.0 CA A:PRO155 3.4 47.0 1.0 CG A:GLU154 3.7 55.7 1.0 C A:PRO155 3.8 57.6 1.0 CB A:ALA174 3.8 47.3 1.0 CB A:PRO155 3.8 48.1 1.0 CB A:GLU154 3.9 51.0 1.0 CE1 A:TYR151 4.0 50.6 1.0 CZ A:TYR151 4.0 51.2 1.0 CD A:GLU154 4.0 57.6 1.0 CD2 A:LEU184 4.1 48.1 1.0 O A:VAL156 4.2 48.1 1.0 CG2 A:VAL156 4.2 55.0 1.0 OE2 A:GLU154 4.3 63.6 1.0 CA A:GLU154 4.3 50.3 1.0 CA A:VAL156 4.4 51.2 1.0 OE1 A:GLU154 4.5 70.5 1.0 N A:PRO155 4.6 54.7 1.0 CB A:VAL156 4.7 51.3 1.0 C A:VAL156 4.8 56.0 1.0 O A:PRO155 4.9 59.5 1.0 CA A:ALA174 5.0 54.1 1.0 N A:ALA174 5.0 50.7 1.0

W.Dejnirattisai, D.Zhou, P.Supasa, C.Liu, A.J.Mentzer, H.M.Ginn, Y.Zhao, H.M.Duyvesteyn, A.Tuekprakhon, R.Nutalai, B.Wang, G.C.Paesen, C.Lopez-Camacho, J.Slon-Campos, T.S.Walter, D.Skelly, F.G.Naveca, V.Nascimento, F.Nascimento, P.C.Resende, A.Pauvolid-Correa, M.M.Siqueira, C.Dold, R.Levin, T.Dong, A.J.Pollard, J.C.Knight, D.Crook, T.Lambe, E.Clutterbuck, S.Bibi, A.Flaxman, M.Bittaye, S.Belij-Rammerstorfer, S.Gilbert, M.W.Carroll, P.Klenerman, E.Barnes, S.J.Dunachie, N.G.Paterson, M.A.Williams, D.R.Hall, R.J.Hulswit, T.A.Bowden, E.E.Fry, J.Mongkolsapaya, J.Ren, D.I.Stuart, G.R.Screaton. Antibody Evasion By the P.1 Strain of Sars-Cov-2 Cell(Cambridge,Mass.) 2021.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2021.03.055