Chlorine in PDB 7o1p: [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent)
Protein crystallography data
The structure of [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent), PDB code: 7o1p
was solved by
R.Rohac,
L.Martin,
L.Liu,
D.Basu,
L.Tao,
R.D.Britt,
T.Rauchfuss,
Y.Nicolet,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.00 /
2.58
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.45,
79.16,
85.76,
90,
90,
90
|
R / Rfree (%)
|
17.9 /
24
|
Other elements in 7o1p:
The structure of [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent) also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent)
(pdb code 7o1p). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
[Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent), PDB code: 7o1p:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7o1p
Go back to
Chlorine Binding Sites List in 7o1p
Chlorine binding site 1 out
of 4 in the [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl409
b:53.4
occ:0.50
|
CL
|
A:CL409
|
0.0
|
53.4
|
0.5
|
CL
|
A:CL409
|
0.7
|
52.4
|
0.5
|
OH
|
A:TYR306
|
3.2
|
68.9
|
1.0
|
N
|
A:THR269
|
3.6
|
53.6
|
1.0
|
CB
|
A:THR269
|
3.8
|
42.5
|
1.0
|
N
|
A:ALA270
|
3.8
|
47.2
|
1.0
|
CB
|
A:THR268
|
4.1
|
48.6
|
1.0
|
CE2
|
A:TYR306
|
4.1
|
90.8
|
1.0
|
CZ
|
A:TYR306
|
4.1
|
63.5
|
1.0
|
CA
|
A:THR269
|
4.1
|
56.0
|
1.0
|
OG1
|
A:THR269
|
4.2
|
83.6
|
1.0
|
NH2
|
A:ARG159
|
4.3
|
62.7
|
1.0
|
C
|
A:THR269
|
4.4
|
61.1
|
1.0
|
C
|
A:THR268
|
4.5
|
51.7
|
1.0
|
CA
|
A:THR268
|
4.6
|
45.7
|
1.0
|
CB
|
A:ALA270
|
4.6
|
41.3
|
1.0
|
CA
|
A:ALA270
|
4.8
|
43.4
|
1.0
|
CG2
|
A:THR268
|
4.8
|
36.6
|
1.0
|
OG1
|
A:THR268
|
4.9
|
67.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7o1p
Go back to
Chlorine Binding Sites List in 7o1p
Chlorine binding site 2 out
of 4 in the [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl409
b:52.4
occ:0.50
|
CL
|
A:CL409
|
0.0
|
52.4
|
0.5
|
CL
|
A:CL409
|
0.7
|
53.4
|
0.5
|
CB
|
A:THR268
|
3.6
|
48.6
|
1.0
|
NH2
|
A:ARG159
|
3.6
|
62.7
|
1.0
|
N
|
A:THR269
|
3.7
|
53.6
|
1.0
|
OH
|
A:TYR306
|
3.7
|
68.9
|
1.0
|
N
|
A:ALA270
|
4.0
|
47.2
|
1.0
|
CG2
|
A:THR268
|
4.2
|
36.6
|
1.0
|
CA
|
A:THR268
|
4.3
|
45.7
|
1.0
|
CB
|
A:THR269
|
4.3
|
42.5
|
1.0
|
C
|
A:THR268
|
4.4
|
51.7
|
1.0
|
OG1
|
A:THR268
|
4.4
|
67.5
|
1.0
|
CE2
|
A:TYR306
|
4.4
|
90.8
|
1.0
|
CA
|
A:THR269
|
4.4
|
56.0
|
1.0
|
CB
|
A:ALA270
|
4.5
|
41.3
|
1.0
|
CZ
|
A:TYR306
|
4.6
|
63.5
|
1.0
|
CZ
|
A:ARG159
|
4.6
|
51.5
|
1.0
|
OG1
|
A:THR269
|
4.7
|
83.6
|
1.0
|
C
|
A:THR269
|
4.7
|
61.1
|
1.0
|
NH1
|
A:ARG159
|
4.8
|
76.4
|
1.0
|
CA
|
A:ALA270
|
4.9
|
43.4
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7o1p
Go back to
Chlorine Binding Sites List in 7o1p
Chlorine binding site 3 out
of 4 in the [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl410
b:71.8
occ:1.00
|
OG1
|
A:THR134
|
3.3
|
51.6
|
1.0
|
SD
|
A:MET224
|
3.4
|
88.3
|
0.6
|
CD
|
A:ARG54
|
3.4
|
46.3
|
1.0
|
NH2
|
A:ARG54
|
3.4
|
50.4
|
1.0
|
CG2
|
A:THR134
|
3.8
|
41.5
|
1.0
|
CD
|
A:ARG155
|
3.9
|
47.9
|
1.0
|
CB
|
A:THR134
|
4.0
|
51.7
|
1.0
|
NH1
|
A:ARG155
|
4.1
|
73.8
|
1.0
|
NE
|
A:ARG54
|
4.1
|
73.5
|
1.0
|
CZ
|
A:ARG54
|
4.2
|
91.1
|
1.0
|
CE
|
A:MET224
|
4.2
|
67.4
|
0.4
|
CG2
|
A:THR103
|
4.2
|
40.2
|
1.0
|
CE
|
A:MET291
|
4.3
|
60.8
|
0.4
|
CG2
|
A:VAL105
|
4.3
|
37.4
|
1.0
|
CE
|
A:MET224
|
4.5
|
56.7
|
0.6
|
CG
|
A:ARG54
|
4.6
|
64.9
|
1.0
|
NE
|
A:ARG155
|
4.7
|
50.2
|
1.0
|
CB
|
A:ARG54
|
4.7
|
54.9
|
1.0
|
CD2
|
A:LEU157
|
4.7
|
43.9
|
1.0
|
CG
|
A:MET224
|
4.7
|
56.7
|
0.4
|
CZ
|
A:ARG155
|
4.7
|
62.8
|
1.0
|
CB
|
A:ARG155
|
4.8
|
59.0
|
1.0
|
CG
|
A:MET224
|
4.9
|
69.3
|
0.6
|
CD1
|
A:LEU157
|
4.9
|
38.5
|
1.0
|
SD
|
A:MET224
|
4.9
|
57.9
|
0.4
|
CG
|
A:ARG155
|
4.9
|
63.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7o1p
Go back to
Chlorine Binding Sites List in 7o1p
Chlorine binding site 4 out
of 4 in the [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of [Fefe]-Hydrogenase Maturase Hyde From T. Maritima (C-Ter Stretch Absent) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl411
b:62.3
occ:1.00
|
ND1
|
A:HIS52
|
3.3
|
69.7
|
1.0
|
NH1
|
A:ARG54
|
3.4
|
54.0
|
1.0
|
OG1
|
A:THR103
|
3.5
|
64.3
|
1.0
|
NE
|
A:ARG54
|
3.5
|
73.5
|
1.0
|
CZ
|
A:ARG54
|
3.9
|
91.1
|
1.0
|
CE1
|
A:HIS52
|
4.2
|
128.2
|
1.0
|
CG
|
A:HIS52
|
4.3
|
70.9
|
1.0
|
CB
|
A:HIS52
|
4.4
|
47.7
|
1.0
|
CB
|
A:LYS102
|
4.6
|
55.1
|
1.0
|
CB
|
A:THR103
|
4.7
|
45.4
|
1.0
|
CD
|
A:ARG54
|
4.7
|
46.3
|
1.0
|
CG
|
A:ARG54
|
4.8
|
64.9
|
1.0
|
NH2
|
A:ARG155
|
4.8
|
50.2
|
1.0
|
C
|
A:LYS102
|
4.9
|
50.8
|
1.0
|
N
|
A:THR103
|
5.0
|
52.9
|
1.0
|
O
|
A:LYS102
|
5.0
|
69.5
|
1.0
|
|
Reference:
Y.Nicolet,
J.K.Rubach,
M.C.Posewitz,
P.Amara,
C.Mathevon,
M.Atta,
M.Fontecave,
J.C.Fontecilla-Camps.
X-Ray Structure of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima* Journal of Biological V. 283 18861 2008CHEMISTRY.
DOI: 10.1074/JBC.M801161200
Page generated: Tue Jul 30 01:11:22 2024
|