Chlorine in PDB 7obz: Structure of Rslov D109G
Protein crystallography data
The structure of Structure of Rslov D109G, PDB code: 7obz
was solved by
A.Moeglich,
T.G.A.Krafft,
M.Weyand,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.37 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
90.96,
65.8,
122.72,
90,
94,
90
|
R / Rfree (%)
|
21.8 /
26.3
|
Other elements in 7obz:
The structure of Structure of Rslov D109G also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Chlorine atom in the Structure of Rslov D109G
(pdb code 7obz). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the
Structure of Rslov D109G, PDB code: 7obz:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 1 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:56.4
occ:1.00
|
OG1
|
A:THR46
|
3.0
|
58.0
|
1.0
|
CB
|
A:THR46
|
3.9
|
56.5
|
1.0
|
CG2
|
A:THR46
|
4.1
|
60.7
|
1.0
|
N
|
A:GLN49
|
4.2
|
53.4
|
1.0
|
O
|
A:HOH350
|
4.5
|
65.1
|
1.0
|
CB
|
A:GLN49
|
4.6
|
53.9
|
1.0
|
CA
|
A:GLY48
|
4.6
|
60.2
|
1.0
|
C
|
A:GLY48
|
4.7
|
63.3
|
1.0
|
N
|
A:GLY48
|
4.9
|
57.1
|
1.0
|
CA
|
A:GLN49
|
4.9
|
51.1
|
1.0
|
NE2
|
A:GLN49
|
4.9
|
57.6
|
1.0
|
CD
|
A:GLN49
|
4.9
|
59.4
|
1.0
|
|
Chlorine binding site 2 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 2 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:61.9
occ:1.00
|
N
|
A:ASN54
|
3.2
|
48.5
|
1.0
|
O
|
A:HOH343
|
3.4
|
62.3
|
1.0
|
CB
|
A:ASN54
|
3.7
|
54.4
|
1.0
|
CA
|
A:PHE53
|
4.0
|
43.5
|
1.0
|
CA
|
A:ASN54
|
4.1
|
44.0
|
1.0
|
C
|
A:PHE53
|
4.1
|
55.9
|
1.0
|
CD2
|
A:PHE53
|
4.1
|
47.9
|
1.0
|
CB
|
A:PHE53
|
4.5
|
47.4
|
1.0
|
NH1
|
A:ARG56
|
4.6
|
48.4
|
1.0
|
O
|
A:GLY52
|
4.6
|
45.2
|
1.0
|
CG
|
A:PHE53
|
4.7
|
55.0
|
1.0
|
O
|
A:ASN54
|
4.9
|
46.3
|
1.0
|
OE1
|
A:GLU29
|
4.9
|
97.4
|
1.0
|
CE2
|
A:PHE53
|
5.0
|
61.3
|
1.0
|
|
Chlorine binding site 3 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 3 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl204
b:79.0
occ:1.00
|
CA
|
A:GLY52
|
3.6
|
43.3
|
1.0
|
CG1
|
A:VAL33
|
3.8
|
45.1
|
1.0
|
CG
|
A:PRO31
|
3.9
|
53.3
|
1.0
|
CB
|
A:PRO31
|
3.9
|
51.4
|
1.0
|
O
|
A:LEU32
|
4.0
|
50.4
|
1.0
|
N
|
A:GLY52
|
4.0
|
51.1
|
1.0
|
C
|
A:GLY52
|
4.8
|
53.6
|
1.0
|
C
|
A:LEU32
|
4.8
|
52.1
|
1.0
|
CB
|
A:VAL33
|
4.9
|
47.9
|
1.0
|
CA
|
A:VAL33
|
4.9
|
46.0
|
1.0
|
C
|
A:LEU51
|
5.0
|
47.0
|
1.0
|
|
Chlorine binding site 4 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 4 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:88.5
occ:1.00
|
OD1
|
A:ASP62
|
3.4
|
77.9
|
1.0
|
O
|
A:GLY61
|
3.5
|
64.9
|
1.0
|
CG
|
A:ASP62
|
3.7
|
71.2
|
1.0
|
CB
|
A:ASP62
|
3.8
|
70.2
|
1.0
|
CA
|
A:ASP62
|
3.8
|
72.2
|
1.0
|
NH2
|
A:ARG68
|
3.8
|
71.3
|
1.0
|
C
|
A:GLY61
|
4.2
|
72.3
|
1.0
|
CZ
|
A:ARG68
|
4.3
|
60.9
|
1.0
|
N
|
A:ASP62
|
4.3
|
78.8
|
1.0
|
O
|
A:HOH341
|
4.4
|
49.2
|
1.0
|
NH1
|
A:ARG68
|
4.5
|
63.2
|
1.0
|
OD2
|
A:ASP62
|
4.6
|
74.7
|
1.0
|
O
|
A:HOH349
|
4.8
|
58.1
|
1.0
|
O
|
A:HOH335
|
4.9
|
45.2
|
1.0
|
|
Chlorine binding site 5 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 5 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl206
b:65.3
occ:1.00
|
OG1
|
B:THR46
|
2.8
|
63.9
|
1.0
|
NH1
|
A:ARG79
|
3.2
|
50.2
|
1.0
|
CB
|
B:THR46
|
3.8
|
60.0
|
1.0
|
CD
|
A:ARG79
|
3.8
|
55.0
|
1.0
|
CD1
|
A:LEU77
|
3.8
|
50.8
|
1.0
|
CG
|
A:ARG79
|
3.8
|
49.5
|
1.0
|
CG2
|
B:THR46
|
4.2
|
65.3
|
1.0
|
CZ
|
A:ARG79
|
4.3
|
63.7
|
1.0
|
N
|
B:GLN49
|
4.4
|
52.4
|
1.0
|
CA
|
B:GLY48
|
4.5
|
53.1
|
1.0
|
CB
|
A:LEU77
|
4.5
|
44.2
|
1.0
|
CG
|
A:LEU77
|
4.5
|
57.1
|
1.0
|
NE
|
A:ARG79
|
4.5
|
53.0
|
1.0
|
N
|
B:GLY48
|
4.5
|
58.9
|
1.0
|
CD2
|
A:LEU77
|
4.6
|
51.6
|
1.0
|
C
|
B:GLY48
|
4.7
|
59.4
|
1.0
|
CB
|
B:GLN49
|
4.9
|
56.0
|
1.0
|
|
Chlorine binding site 6 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 6 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl207
b:81.7
occ:1.00
|
CB
|
A:MET42
|
3.8
|
51.0
|
1.0
|
CA
|
A:MET42
|
3.8
|
50.3
|
1.0
|
O
|
A:ARG41
|
4.0
|
54.6
|
1.0
|
N
|
A:MET42
|
4.0
|
61.6
|
1.0
|
C
|
A:ARG41
|
4.0
|
62.9
|
1.0
|
CG
|
A:ARG41
|
4.1
|
70.0
|
1.0
|
O
|
A:PRO38
|
4.4
|
49.1
|
1.0
|
CB
|
A:ARG41
|
4.4
|
61.2
|
1.0
|
CD
|
A:ARG41
|
4.4
|
84.2
|
1.0
|
SD
|
D:MET155
|
4.7
|
110.1
|
1.0
|
NH1
|
A:ARG41
|
4.8
|
82.2
|
1.0
|
CG
|
A:MET42
|
4.9
|
53.4
|
1.0
|
CA
|
A:ARG41
|
4.9
|
57.3
|
1.0
|
OE1
|
A:GLU120
|
4.9
|
54.8
|
1.0
|
NH1
|
A:ARG123
|
4.9
|
87.0
|
1.0
|
|
Chlorine binding site 7 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 7 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl202
b:63.9
occ:1.00
|
N
|
B:GLU80
|
3.3
|
48.4
|
1.0
|
CA
|
B:ARG79
|
3.6
|
44.5
|
1.0
|
CB
|
B:ARG79
|
3.7
|
50.1
|
1.0
|
CG
|
B:GLU80
|
3.8
|
70.9
|
1.0
|
C
|
B:ARG79
|
4.0
|
57.6
|
1.0
|
CB
|
B:GLU80
|
4.2
|
43.9
|
1.0
|
CG
|
B:ARG79
|
4.3
|
47.9
|
1.0
|
CA
|
B:GLU80
|
4.3
|
54.0
|
1.0
|
CD
|
B:GLU80
|
4.6
|
63.4
|
1.0
|
O
|
B:GLY78
|
4.6
|
49.9
|
1.0
|
CD
|
B:ARG79
|
4.7
|
54.6
|
1.0
|
N
|
B:ARG79
|
4.8
|
40.8
|
1.0
|
O
|
B:GLU80
|
4.9
|
49.6
|
1.0
|
|
Chlorine binding site 8 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 8 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl202
b:85.7
occ:1.00
|
NE
|
C:ARG107
|
3.6
|
65.4
|
1.0
|
CD
|
C:ARG107
|
3.8
|
59.6
|
1.0
|
CZ
|
C:ARG107
|
3.9
|
63.1
|
1.0
|
NH1
|
C:ARG107
|
4.3
|
65.5
|
1.0
|
CB
|
C:ALA110
|
4.3
|
53.8
|
1.0
|
NH2
|
C:ARG107
|
4.3
|
66.9
|
1.0
|
CG
|
C:ARG107
|
4.4
|
58.1
|
1.0
|
O
|
C:HOH342
|
4.5
|
63.2
|
1.0
|
|
Chlorine binding site 9 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 9 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl203
b:78.7
occ:1.00
|
CA
|
C:GLY105
|
3.3
|
48.7
|
1.0
|
N
|
C:GLY106
|
3.3
|
49.4
|
1.0
|
CB
|
C:MET1
|
3.4
|
76.2
|
1.0
|
C
|
C:GLY105
|
3.8
|
50.0
|
1.0
|
OD2
|
C:ASP112
|
3.8
|
68.1
|
1.0
|
CG
|
C:MET1
|
3.8
|
79.5
|
1.0
|
SD
|
C:MET1
|
4.1
|
88.3
|
1.0
|
CA
|
C:MET1
|
4.2
|
79.0
|
1.0
|
CA
|
C:GLY106
|
4.4
|
52.8
|
1.0
|
O
|
C:GLY106
|
4.5
|
53.5
|
1.0
|
N
|
C:GLY105
|
4.6
|
51.8
|
1.0
|
CG
|
C:ASP112
|
4.8
|
63.4
|
1.0
|
O
|
C:GLY105
|
4.9
|
50.9
|
1.0
|
O
|
C:HOH312
|
5.0
|
54.4
|
1.0
|
C
|
C:GLY106
|
5.0
|
60.9
|
1.0
|
|
Chlorine binding site 10 out
of 13 in 7obz
Go back to
Chlorine Binding Sites List in 7obz
Chlorine binding site 10 out
of 13 in the Structure of Rslov D109G
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Structure of Rslov D109G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl204
b:86.8
occ:1.00
|
NH1
|
C:ARG107
|
4.0
|
65.5
|
1.0
|
CZ
|
C:ARG107
|
4.2
|
63.1
|
1.0
|
NE
|
C:ARG107
|
4.5
|
65.4
|
1.0
|
CD
|
C:ARG107
|
4.7
|
59.6
|
1.0
|
NH2
|
C:ARG107
|
4.7
|
66.9
|
1.0
|
CB
|
C:ARG107
|
4.9
|
56.2
|
1.0
|
|
Reference:
J.Dietler,
R.Schubert,
T.G A Krafft,
S.Meiler,
S.Kainrath,
F.Richter,
K.Schweimer,
M.Weyand,
H.Janovjak,
A.Moglich.
A Light-Oxygen-Voltage Receptor Integrates Light and Temperature. J.Mol.Biol. 67107 2021.
ISSN: ESSN 1089-8638
PubMed: 34146595
DOI: 10.1016/J.JMB.2021.167107
Page generated: Tue Jul 30 01:26:09 2024
|