Chlorine in PDB 7ocr: Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
Protein crystallography data
The structure of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii, PDB code: 7ocr
was solved by
H.K.Tam,
V.Mueller,
K.M.Pos,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.71 /
2.60
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
99.886,
157.556,
220.467,
90,
90,
90
|
R / Rfree (%)
|
23 /
25.8
|
Other elements in 7ocr:
The structure of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
(pdb code 7ocr). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii, PDB code: 7ocr:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 7ocr
Go back to
Chlorine Binding Sites List in 7ocr
Chlorine binding site 1 out
of 7 in the Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl809
b:75.5
occ:1.00
|
O
|
A:HOH931
|
3.0
|
62.8
|
1.0
|
N
|
A:VAL414
|
3.3
|
72.1
|
1.0
|
O
|
A:VAL414
|
3.6
|
75.0
|
1.0
|
CL
|
A:CL811
|
3.7
|
75.7
|
1.0
|
CA
|
A:ASN374
|
3.7
|
96.0
|
1.0
|
CA
|
A:VAL413
|
3.8
|
71.6
|
1.0
|
O
|
A:LEU373
|
3.9
|
90.9
|
1.0
|
C
|
A:VAL413
|
4.0
|
70.8
|
1.0
|
CB
|
A:ASN374
|
4.0
|
96.8
|
1.0
|
N
|
A:ASN374
|
4.1
|
94.2
|
1.0
|
CG
|
A:ASN374
|
4.1
|
97.2
|
1.0
|
C6N
|
A:NDP803
|
4.2
|
91.3
|
1.0
|
C
|
A:LEU373
|
4.2
|
91.6
|
1.0
|
CA
|
A:VAL414
|
4.2
|
72.0
|
1.0
|
OD1
|
A:ASN374
|
4.2
|
97.5
|
1.0
|
O
|
A:HOH919
|
4.2
|
66.5
|
1.0
|
C5N
|
A:NDP803
|
4.3
|
91.4
|
1.0
|
CB
|
A:VAL414
|
4.3
|
72.4
|
1.0
|
O
|
A:THR412
|
4.4
|
73.4
|
1.0
|
C
|
A:VAL414
|
4.4
|
73.5
|
1.0
|
CE
|
A:LYS527
|
4.4
|
75.5
|
1.0
|
CG1
|
A:VAL413
|
4.7
|
72.6
|
1.0
|
CB
|
A:VAL413
|
4.7
|
71.8
|
1.0
|
N
|
A:VAL413
|
4.7
|
70.6
|
1.0
|
ND2
|
A:ASN374
|
4.8
|
97.5
|
1.0
|
C
|
A:THR412
|
4.9
|
71.5
|
1.0
|
CG2
|
A:VAL414
|
4.9
|
71.3
|
1.0
|
CD
|
A:LYS527
|
4.9
|
74.2
|
1.0
|
CG
|
A:LYS527
|
4.9
|
74.8
|
1.0
|
C
|
A:ASN374
|
5.0
|
99.0
|
1.0
|
NZ
|
A:LYS527
|
5.0
|
75.0
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 7ocr
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Chlorine Binding Sites List in 7ocr
Chlorine binding site 2 out
of 7 in the Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl810
b:57.6
occ:1.00
|
OG
|
A:SER119
|
2.9
|
65.9
|
1.0
|
N
|
A:LYS151
|
3.3
|
65.7
|
1.0
|
CA
|
A:GLY150
|
3.5
|
67.8
|
1.0
|
CB
|
A:SER119
|
3.6
|
66.3
|
1.0
|
CA
|
A:SER119
|
3.7
|
65.7
|
1.0
|
CD1
|
A:ILE156
|
3.8
|
60.8
|
1.0
|
CG
|
A:LYS151
|
3.9
|
63.1
|
1.0
|
C
|
A:GLY150
|
3.9
|
67.0
|
1.0
|
CA
|
A:GLY144
|
4.1
|
72.6
|
1.0
|
CD
|
A:LYS151
|
4.1
|
62.7
|
1.0
|
CB
|
A:LYS151
|
4.2
|
64.2
|
1.0
|
CE
|
A:LYS151
|
4.4
|
61.8
|
1.0
|
CA
|
A:LYS151
|
4.4
|
64.9
|
1.0
|
N
|
A:SER119
|
4.5
|
63.8
|
1.0
|
O
|
A:THR118
|
4.7
|
62.6
|
1.0
|
CG2
|
A:VAL147
|
4.8
|
71.9
|
1.0
|
CG2
|
A:ILE156
|
4.8
|
60.1
|
1.0
|
CB
|
A:ILE156
|
4.9
|
60.6
|
1.0
|
C
|
A:SER119
|
4.9
|
67.0
|
1.0
|
CG1
|
A:ILE156
|
4.9
|
60.2
|
1.0
|
C
|
A:THR118
|
4.9
|
62.3
|
1.0
|
N
|
A:GLY150
|
4.9
|
69.5
|
1.0
|
N
|
A:GLY144
|
4.9
|
71.4
|
1.0
|
O
|
A:SER119
|
5.0
|
68.6
|
1.0
|
|
Chlorine binding site 3 out
of 7 in 7ocr
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Chlorine Binding Sites List in 7ocr
Chlorine binding site 3 out
of 7 in the Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl811
b:75.7
occ:1.00
|
O
|
A:HOH919
|
2.9
|
66.5
|
1.0
|
OE1
|
A:GLN524
|
3.6
|
78.4
|
1.0
|
CL
|
A:CL809
|
3.7
|
75.5
|
1.0
|
CG
|
A:GLN524
|
3.7
|
77.9
|
1.0
|
OD1
|
A:ASN374
|
3.9
|
97.5
|
1.0
|
N
|
A:LYS375
|
4.0
|
100.2
|
1.0
|
CD
|
A:GLN524
|
4.1
|
78.4
|
1.0
|
O
|
A:LYS375
|
4.1
|
101.3
|
1.0
|
O
|
A:LEU373
|
4.2
|
90.9
|
1.0
|
CA
|
A:ASN374
|
4.2
|
96.0
|
1.0
|
C
|
A:ASN374
|
4.3
|
99.0
|
1.0
|
C
|
A:LYS375
|
4.3
|
102.8
|
1.0
|
CG
|
A:LYS527
|
4.4
|
74.8
|
1.0
|
CG2
|
A:VAL413
|
4.5
|
73.0
|
1.0
|
O
|
A:THR412
|
4.6
|
73.4
|
1.0
|
CA
|
A:LYS375
|
4.7
|
103.0
|
1.0
|
N
|
A:VAL376
|
4.8
|
105.0
|
1.0
|
CG
|
A:ASN374
|
4.8
|
97.2
|
1.0
|
O
|
A:HOH931
|
4.9
|
62.8
|
1.0
|
CB
|
A:GLN524
|
5.0
|
76.4
|
1.0
|
|
Chlorine binding site 4 out
of 7 in 7ocr
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Chlorine Binding Sites List in 7ocr
Chlorine binding site 4 out
of 7 in the Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl812
b:67.0
occ:1.00
|
N
|
A:GLY99
|
3.0
|
54.4
|
1.0
|
N
|
A:GLN244
|
3.2
|
55.8
|
1.0
|
NE2
|
A:GLN102
|
3.3
|
52.1
|
1.0
|
CA
|
A:GLY99
|
3.5
|
53.6
|
1.0
|
CB
|
A:GLN244
|
3.7
|
57.1
|
1.0
|
CB
|
A:ASN243
|
3.7
|
54.1
|
1.0
|
CG
|
A:GLN244
|
3.8
|
57.0
|
1.0
|
CA
|
A:ASN243
|
4.0
|
54.7
|
1.0
|
CA
|
A:GLN244
|
4.0
|
57.0
|
1.0
|
C
|
A:LYS98
|
4.0
|
55.1
|
1.0
|
C
|
A:ASN243
|
4.1
|
55.8
|
1.0
|
CG
|
A:GLN102
|
4.1
|
51.2
|
1.0
|
CG
|
A:LYS98
|
4.1
|
58.7
|
1.0
|
CE1
|
A:TYR216
|
4.2
|
56.1
|
1.0
|
CD
|
A:GLN102
|
4.2
|
51.4
|
1.0
|
CA
|
A:LYS98
|
4.3
|
56.5
|
1.0
|
C
|
A:GLY99
|
4.4
|
52.9
|
1.0
|
CD
|
A:GLN244
|
4.4
|
57.5
|
1.0
|
C
|
A:GLN244
|
4.7
|
57.2
|
1.0
|
CG
|
A:ASN243
|
4.8
|
54.8
|
1.0
|
NE2
|
A:GLN244
|
4.8
|
57.1
|
1.0
|
CB
|
A:LYS98
|
4.8
|
58.0
|
1.0
|
N
|
A:LEU100
|
4.8
|
52.9
|
1.0
|
N
|
A:LEU245
|
4.9
|
56.3
|
1.0
|
CD1
|
A:TYR216
|
4.9
|
56.1
|
1.0
|
OE1
|
A:GLN244
|
5.0
|
58.4
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 7ocr
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Chlorine Binding Sites List in 7ocr
Chlorine binding site 5 out
of 7 in the Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl801
b:64.2
occ:1.00
|
N
|
B:GLU548
|
3.4
|
69.9
|
1.0
|
CG1
|
B:VAL552
|
3.7
|
68.1
|
1.0
|
N
|
B:SER549
|
3.7
|
67.3
|
1.0
|
CB
|
B:VAL552
|
3.8
|
66.8
|
1.0
|
CA
|
B:TYR547
|
3.9
|
70.9
|
1.0
|
CD1
|
B:TYR547
|
4.0
|
70.3
|
1.0
|
CB
|
B:SER549
|
4.1
|
65.8
|
1.0
|
C
|
B:TYR547
|
4.1
|
70.3
|
1.0
|
CG2
|
B:VAL552
|
4.2
|
66.5
|
1.0
|
CA
|
B:GLU548
|
4.3
|
69.8
|
1.0
|
CB
|
B:TYR547
|
4.3
|
69.8
|
1.0
|
C
|
B:GLU548
|
4.4
|
68.3
|
1.0
|
CB
|
B:GLU548
|
4.5
|
71.2
|
1.0
|
CA
|
B:SER549
|
4.5
|
65.8
|
1.0
|
CG
|
B:TYR547
|
4.7
|
70.1
|
1.0
|
O
|
B:SER549
|
4.7
|
65.4
|
1.0
|
NE2
|
A:GLN163
|
4.7
|
62.2
|
1.0
|
CE1
|
B:TYR547
|
4.9
|
70.7
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 7ocr
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Chlorine Binding Sites List in 7ocr
Chlorine binding site 6 out
of 7 in the Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl802
b:50.0
occ:1.00
|
CD
|
B:PRO611
|
3.6
|
73.3
|
1.0
|
CG
|
B:LEU612
|
3.8
|
78.7
|
1.0
|
N
|
B:LEU612
|
3.9
|
74.6
|
1.0
|
CB
|
B:LEU612
|
3.9
|
77.6
|
1.0
|
CD1
|
B:LEU612
|
4.0
|
80.8
|
1.0
|
N
|
B:PRO611
|
4.0
|
72.6
|
1.0
|
CA
|
B:ASP610
|
4.2
|
73.3
|
1.0
|
CD2
|
B:LEU653
|
4.2
|
90.1
|
1.0
|
C
|
B:ASP610
|
4.3
|
72.6
|
1.0
|
CG2
|
B:ILE655
|
4.4
|
99.0
|
1.0
|
CG
|
B:PRO611
|
4.5
|
73.2
|
1.0
|
CA
|
B:LEU612
|
4.6
|
75.7
|
1.0
|
CB
|
B:PRO611
|
4.8
|
73.2
|
1.0
|
CA
|
B:PRO611
|
4.8
|
72.3
|
1.0
|
C
|
B:PRO611
|
4.9
|
73.1
|
1.0
|
N
|
B:ASP610
|
5.0
|
72.6
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 7ocr
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Chlorine Binding Sites List in 7ocr
Chlorine binding site 7 out
of 7 in the Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Nadph and Fructose-6-Phosphate Bound to the Dehydrogenase Domain of the Bifunctional Mannitol-1-Phosphate Dehydrogenase/Phosphatase Mtld From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl803
b:85.7
occ:1.00
|
N
|
B:GLY99
|
3.0
|
89.1
|
1.0
|
NE2
|
B:GLN102
|
3.1
|
84.6
|
1.0
|
N
|
B:GLN244
|
3.3
|
81.7
|
1.0
|
CA
|
B:GLY99
|
3.5
|
88.3
|
1.0
|
CB
|
B:ASN243
|
3.8
|
79.0
|
1.0
|
CB
|
B:GLN244
|
3.8
|
85.1
|
1.0
|
CG
|
B:GLN102
|
3.8
|
83.0
|
1.0
|
CG
|
B:GLN244
|
3.8
|
85.7
|
1.0
|
CD
|
B:GLN102
|
3.9
|
83.4
|
1.0
|
CA
|
B:ASN243
|
4.0
|
79.3
|
1.0
|
C
|
B:LYS98
|
4.0
|
91.2
|
1.0
|
C
|
B:ASN243
|
4.1
|
80.2
|
1.0
|
CA
|
B:GLN244
|
4.1
|
82.8
|
1.0
|
CG
|
B:LYS98
|
4.2
|
90.8
|
1.0
|
C
|
B:GLY99
|
4.2
|
88.2
|
1.0
|
CA
|
B:LYS98
|
4.3
|
91.8
|
1.0
|
CD
|
B:GLN244
|
4.4
|
88.2
|
1.0
|
NE2
|
B:GLN244
|
4.6
|
88.8
|
1.0
|
N
|
B:LEU100
|
4.6
|
89.0
|
1.0
|
CE2
|
B:TYR216
|
4.7
|
89.9
|
1.0
|
CB
|
B:GLN102
|
4.8
|
83.7
|
1.0
|
CB
|
B:LYS98
|
4.8
|
92.6
|
1.0
|
CG
|
B:ASN243
|
4.9
|
77.8
|
1.0
|
N
|
B:GLN102
|
4.9
|
83.6
|
1.0
|
O
|
B:GLY99
|
5.0
|
87.3
|
1.0
|
C
|
B:GLN244
|
5.0
|
82.3
|
1.0
|
N
|
B:LEU245
|
5.0
|
80.6
|
1.0
|
CD2
|
B:TYR216
|
5.0
|
91.8
|
1.0
|
|
Reference:
H.K.Tam,
P.Konig,
S.Himpich,
N.D.Ngu,
R.Abele,
V.Muller,
K.M.Pos.
Unidirectional Mannitol Synthesis of Acinetobacter Baumannii Mtld Is Facilitated By the Helix-Loop-Helix-Mediated Dimer Formation. Proc.Natl.Acad.Sci.Usa V. 119 94119 2022.
ISSN: ESSN 1091-6490
PubMed: 35363566
DOI: 10.1073/PNAS.2107994119
Page generated: Tue Jul 30 01:29:34 2024
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