Chlorine in PDB 7og2: Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase

The structure of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase, PDB code: 7og2 was solved by H.J.Rozeboom, S.Savino, M.W.Fraaije, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.17 / 2.80
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	92.045, 134.159, 251.92, 90, 90, 90
R / Rfree (%)	20.3 / 27

The structure of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase also contains other interesting chemical elements:

Platinum

(Pt)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase (pdb code 7og2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase, PDB code: 7og2:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl703 b:43.1 occ:1.00 NH2 A:ARG125 3.0 34.8 1.0 NH2 B:ARG125 3.2 35.8 1.0 NE A:ARG125 3.6 36.9 1.0 CZ A:ARG125 3.7 37.9 1.0 CG2 A:THR221 3.8 35.3 1.0 NE B:ARG125 3.8 41.2 1.0 CZ B:ARG125 3.9 39.5 1.0 CG2 B:THR221 4.0 43.6 1.0 CB A:THR221 4.9 45.5 1.0 OG1 A:THR221 4.9 48.6 1.0 CD A:ARG125 4.9 39.0 1.0

Chlorine binding site 2 out of 7 in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl704 b:70.1 occ:1.00 CE1 A:HIS502 3.7 60.3 1.0 O A:LYS496 3.8 57.2 1.0 NE2 A:HIS502 4.0 62.7 1.0 O A:THR501 4.1 55.5 1.0 ND1 A:HIS502 4.1 61.1 1.0 OD1 A:ASP497 4.3 49.1 1.0 C A:LYS496 4.4 53.6 1.0 C A:THR501 4.4 59.3 1.0 N A:THR501 4.4 55.9 1.0 CD2 A:HIS502 4.5 61.1 1.0 CG A:HIS502 4.6 61.5 1.0 C A:ASN500 4.8 57.8 1.0 CA A:ASP497 4.8 46.7 1.0 N A:ASP497 4.8 49.8 1.0 CA A:THR501 4.8 56.6 1.0 CB A:LYS496 4.9 51.1 1.0 CA A:ASN500 4.9 55.8 1.0 N A:HIS502 4.9 58.4 1.0

Chlorine binding site 3 out of 7 in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl705 b:80.1 occ:1.00 CG A:ARG493 4.3 59.0 1.0 OD2 A:ASP497 4.4 51.1 1.0 O A:ARG493 4.4 55.5 1.0 CD A:LYS496 4.5 46.7 1.0 CB A:LYS496 4.6 51.1 1.0 CD A:ARG493 4.9 71.7 1.0 CA A:ARG493 4.9 49.0 1.0 CE1 A:HIS502 4.9 60.3 1.0 NE A:ARG493 5.0 72.4 1.0 CB A:ARG493 5.0 51.0 1.0

Chlorine binding site 4 out of 7 in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl706 b:39.1 occ:1.00 N A:GLY118 3.0 48.6 1.0 CA A:GLY118 3.3 48.0 1.0 N A:SER116 3.4 47.6 1.0 CB A:ASN120 3.5 45.3 1.0 CG A:ASN120 3.5 46.1 1.0 ND2 A:ASN120 3.6 44.3 1.0 N A:ASN120 3.6 44.9 1.0 C A:GLY118 3.7 52.7 1.0 CB A:ASN115 3.8 50.2 1.0 CG2 A:VAL131 3.8 44.4 1.0 N A:ASN119 3.9 51.2 1.0 CB A:VAL131 3.9 46.8 1.0 O A:HOH827 4.0 45.6 1.0 N A:GLY117 4.0 48.1 1.0 CA A:ASN115 4.1 49.5 1.0 C A:SER116 4.1 54.3 1.0 CA A:ASN120 4.2 45.1 1.0 CG1 A:VAL131 4.2 53.3 1.0 CA A:SER116 4.2 48.6 1.0 C A:GLY117 4.2 52.3 1.0 OD1 A:ASN120 4.2 45.6 1.0 C A:ASN115 4.3 49.2 1.0 O A:GLY118 4.4 50.9 1.0 CB A:SER116 4.5 46.6 1.0 CA A:GLY117 4.6 50.1 1.0 C A:ASN119 4.7 47.8 1.0 O A:SER116 4.7 56.9 1.0 CG A:ASN115 4.8 53.1 1.0 OD1 A:ASN115 4.9 56.1 1.0 CA A:ASN119 4.9 48.5 1.0

Chlorine binding site 5 out of 7 in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl705 b:34.9 occ:1.00 N B:GLY118 3.1 45.1 1.0 CA B:GLY118 3.4 41.8 1.0 N B:SER116 3.4 47.7 1.0 CB B:ASN120 3.5 46.6 1.0 N B:ASN120 3.5 49.3 1.0 C B:GLY118 3.6 47.9 1.0 ND2 B:ASN120 3.7 54.2 1.0 N B:ASN119 3.7 49.0 1.0 O B:HOH838 3.7 54.8 1.0 CG2 B:VAL131 3.8 43.4 1.0 CB B:VAL131 3.8 42.5 1.0 CB B:ASN115 3.9 45.7 1.0 CG B:ASN120 3.9 49.1 1.0 N B:GLY117 4.0 44.6 1.0 CG1 B:VAL131 4.1 41.5 1.0 C B:SER116 4.1 46.1 1.0 CA B:ASN115 4.1 46.9 1.0 CA B:ASN120 4.1 48.2 1.0 CA B:SER116 4.2 46.6 1.0 O B:GLY118 4.3 50.1 1.0 C B:ASN115 4.3 47.7 1.0 C B:GLY117 4.3 44.1 1.0 O B:SER116 4.6 47.0 1.0 C B:ASN119 4.6 49.5 1.0 CB B:SER116 4.6 46.5 1.0 OD1 B:ASN115 4.7 48.1 1.0 CA B:GLY117 4.7 42.3 1.0 CA B:ASN119 4.8 47.8 1.0 CG B:ASN115 4.8 48.7 1.0 OD1 B:ASN120 4.8 47.3 1.0

Chlorine binding site 6 out of 7 in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl706 b:73.1 occ:1.00 CE1 B:TYR215 3.3 55.8 1.0 CD1 B:TYR215 3.6 53.8 1.0 CZ B:TYR215 3.6 56.3 1.0 CG B:TYR215 4.1 55.4 1.0 OH B:TYR215 4.1 57.6 1.0 NH2 B:ARG167 4.1 62.8 1.0 CE2 B:TYR215 4.2 55.0 1.0 OG B:SER151 4.2 55.4 1.0 NH1 B:ARG167 4.3 62.9 1.0 CD2 B:TYR215 4.4 53.6 1.0 O B:GLY214 4.4 57.1 1.0 C B:GLY214 4.5 53.8 1.0 N B:TYR215 4.6 52.2 1.0 OE2 B:GLU152 4.6 49.6 1.0 CA B:TYR215 4.7 49.9 1.0 O B:MET213 4.7 52.0 1.0 CZ B:ARG167 4.7 58.9 1.0 CG B:GLU152 5.0 47.6 1.0

Chlorine binding site 7 out of 7 in the Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Pseudoalteromonas Luteoviolacea L-Amino Acid Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl707 b:76.8 occ:1.00 N B:LEU69 3.2 74.8 1.0 CB B:LEU69 3.8 73.0 1.0 O B:LYS67 3.8 70.0 1.0 CA B:LEU69 4.0 75.5 1.0 N B:ARG70 4.0 78.4 1.0 OD1 B:ASN68 4.0 74.0 1.0 O B:ASP369 4.1 65.2 1.0 CG B:LEU69 4.1 72.1 1.0 CA B:ASN68 4.1 73.9 1.0 C B:ASN68 4.1 74.9 1.0 CD B:PRO439 4.1 58.4 1.0 CD1 B:LEU69 4.4 69.8 1.0 C B:LEU69 4.4 76.9 1.0 CG B:PRO439 4.5 58.0 1.0 O B:GLU437 4.6 66.2 1.0 CD1 B:ILE77 4.7 60.4 1.0 C B:LYS67 4.8 67.2 1.0 CB B:ARG70 4.8 80.4 1.0 CG B:ASN68 5.0 77.4 1.0 N B:ASN68 5.0 69.8 1.0

S.Savino, J.D.Meijer, H.J.Rozeboom, H.L.Van Beek, M.W.Fraaije. Kinetic and Structural Properties of A Robust Bacterial L-Amino Acid Oxidase Catalysts 2021.
ISSN: ESSN 2073-4344
DOI: 10.3390/CATAL11111309