Chlorine in PDB 7okd: Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 25

Protein crystallography data

The structure of Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 25, PDB code: 7okd was solved by E.A.Gunnell, Y.-V.Le Bihan, R.L.M.Van Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.34 / 1.94
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 67.52, 67.52, 167.19, 90, 90, 120
R / Rfree (%) 18.1 / 19.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 25 (pdb code 7okd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 25, PDB code: 7okd:

Chlorine binding site 1 out of 1 in 7okd

Go back to Chlorine Binding Sites List in 7okd
Chlorine binding site 1 out of 1 in the Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 25


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human BCL6 Btb Domain in Complex with Compound 25 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:47.5
occ:0.97
CL A:VGW201 0.0 47.5 1.0
C23 A:VGW201 1.7 38.4 1.0
N5 A:VGW201 2.6 38.2 1.0
C24 A:VGW201 2.7 35.0 1.0
C25 A:VGW201 3.0 33.2 1.0
N6 A:VGW201 3.6 31.8 1.0
CE1 A:TYR58 3.8 42.8 1.0
C22 A:VGW201 3.8 37.9 1.0
C20 A:VGW201 4.0 35.3 1.0
OH A:TYR58 4.0 56.7 1.0
CZ A:TYR58 4.2 52.4 1.0
C21 A:VGW201 4.4 35.7 1.0
CD1 A:TYR58 4.7 41.5 1.0

Reference:

M.G.Lloyd, R.Huckvale, K.J.Cheung, M.J.Rodrigues, G.W.Collie, O.A.Pierrat, M.Gatti Iou, M.Carter, O.A.Davis, P.C.Mcandrew, E.Gunnell, Y.V.Le Bihan, R.Talbot, A.T.Henley, L.D.Johnson, A.Hayes, M.D.Bright, F.I.Raynaud, M.Meniconi, R.Burke, R.L.M.Van Montfort, O.W.Rossanese, B.R.Bellenie, S.Hoelder. Into Deep Water: Optimizing BCL6 Inhibitors By Growing Into A Solvated Pocket. J.Med.Chem. 2021.
ISSN: ISSN 0022-2623
PubMed: 34846884
DOI: 10.1021/ACS.JMEDCHEM.1C00946
Page generated: Fri Dec 17 08:54:34 2021

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