Chlorine in PDB 7ol7: Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form
Enzymatic activity of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form
All present enzymatic activity of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form:
3.2.1.17;
Protein crystallography data
The structure of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form, PDB code: 7ol7
was solved by
A.Camara-Artigas,
M.C.Salinas-Garcia,
M.Plaza-Garrido,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.05 /
1.15
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.547,
78.547,
37.332,
90,
90,
90
|
R / Rfree (%)
|
15.4 /
17.4
|
Other elements in 7ol7:
The structure of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form
(pdb code 7ol7). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form, PDB code: 7ol7:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 7ol7
Go back to
Chlorine Binding Sites List in 7ol7
Chlorine binding site 1 out
of 5 in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:27.4
occ:1.00
|
H
|
A:GLY26
|
2.4
|
19.7
|
1.0
|
HG
|
A:SER24
|
2.7
|
26.5
|
1.0
|
HA
|
A:GLN121
|
2.8
|
27.6
|
1.0
|
HA3
|
A:GLY26
|
2.9
|
20.6
|
1.0
|
HB2
|
A:SER24
|
3.0
|
24.1
|
1.0
|
OG
|
A:SER24
|
3.1
|
22.1
|
1.0
|
N
|
A:GLY26
|
3.2
|
16.4
|
1.0
|
HG23
|
A:VAL120
|
3.3
|
27.6
|
1.0
|
HD13
|
A:ILE124
|
3.4
|
35.6
|
1.0
|
CA
|
A:GLY26
|
3.5
|
17.2
|
1.0
|
CB
|
A:SER24
|
3.5
|
20.1
|
1.0
|
HB2
|
A:GLN121
|
3.6
|
31.5
|
1.0
|
HD11
|
A:ILE124
|
3.6
|
35.6
|
1.0
|
CA
|
A:GLN121
|
3.6
|
23.0
|
1.0
|
HG12
|
A:ILE124
|
3.6
|
31.9
|
1.0
|
HG2
|
A:GLN121
|
3.8
|
38.9
|
1.0
|
CD1
|
A:ILE124
|
3.9
|
29.7
|
1.0
|
N
|
A:GLN121
|
3.9
|
21.9
|
1.0
|
CB
|
A:GLN121
|
4.0
|
26.2
|
1.0
|
H
|
A:ASN27
|
4.1
|
18.5
|
1.0
|
HA2
|
A:GLY26
|
4.1
|
20.6
|
1.0
|
HB3
|
A:SER24
|
4.2
|
24.1
|
1.0
|
H
|
A:LEU25
|
4.2
|
21.3
|
1.0
|
C
|
A:VAL120
|
4.2
|
19.7
|
1.0
|
O
|
A:VAL120
|
4.3
|
19.0
|
1.0
|
H
|
A:GLN121
|
4.3
|
26.3
|
1.0
|
N
|
A:LEU25
|
4.3
|
17.8
|
1.0
|
CG2
|
A:VAL120
|
4.3
|
23.0
|
1.0
|
CG
|
A:GLN121
|
4.3
|
32.4
|
1.0
|
CG1
|
A:ILE124
|
4.3
|
26.6
|
1.0
|
C
|
A:LEU25
|
4.4
|
16.1
|
1.0
|
C
|
A:SER24
|
4.4
|
17.0
|
1.0
|
HG3
|
A:GLN121
|
4.4
|
38.9
|
1.0
|
HB3
|
A:LEU25
|
4.4
|
22.1
|
1.0
|
HG21
|
A:VAL120
|
4.5
|
27.6
|
1.0
|
C
|
A:GLY26
|
4.5
|
14.8
|
1.0
|
HG23
|
A:ILE124
|
4.6
|
28.3
|
1.0
|
N
|
A:ASN27
|
4.6
|
15.4
|
1.0
|
CA
|
A:SER24
|
4.6
|
17.3
|
1.0
|
CA
|
A:LEU25
|
4.8
|
16.9
|
1.0
|
HD12
|
A:ILE124
|
4.8
|
35.6
|
1.0
|
HG22
|
A:VAL120
|
4.8
|
27.6
|
1.0
|
O
|
A:SER24
|
4.8
|
18.5
|
1.0
|
HB
|
A:VAL120
|
4.8
|
24.2
|
1.0
|
C
|
A:GLN121
|
4.8
|
20.5
|
1.0
|
HG13
|
A:ILE124
|
4.9
|
31.9
|
1.0
|
HB3
|
A:GLN121
|
4.9
|
31.5
|
1.0
|
HG21
|
A:ILE124
|
4.9
|
28.3
|
1.0
|
HD22
|
A:ASN27
|
5.0
|
19.7
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 7ol7
Go back to
Chlorine Binding Sites List in 7ol7
Chlorine binding site 2 out
of 5 in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:21.7
occ:1.00
|
HH
|
A:TYR23
|
2.4
|
18.9
|
1.0
|
OH
|
A:TYR23
|
3.0
|
15.7
|
1.0
|
O
|
A:HOH405
|
3.1
|
37.6
|
1.0
|
HE2
|
A:TYR23
|
3.2
|
17.4
|
1.0
|
O
|
A:HOH343
|
3.2
|
19.3
|
1.0
|
HA3
|
A:GLY104
|
3.5
|
19.8
|
1.0
|
CZ
|
A:TYR23
|
3.6
|
14.3
|
1.0
|
CE2
|
A:TYR23
|
3.6
|
14.5
|
1.0
|
HA2
|
A:GLY104
|
4.3
|
19.8
|
1.0
|
CA
|
A:GLY104
|
4.3
|
16.5
|
1.0
|
O
|
A:ARG21
|
4.6
|
18.1
|
1.0
|
CE1
|
A:TYR23
|
4.8
|
15.3
|
1.0
|
H
|
A:MET105
|
4.8
|
17.2
|
1.0
|
CD2
|
A:TYR23
|
4.9
|
15.0
|
1.0
|
N
|
A:GLY104
|
4.9
|
17.1
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 7ol7
Go back to
Chlorine Binding Sites List in 7ol7
Chlorine binding site 3 out
of 5 in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:46.7
occ:1.00
|
H
|
A:ILE88
|
2.4
|
22.4
|
1.0
|
HG12
|
A:ILE88
|
2.6
|
21.8
|
1.0
|
HA
|
A:ASP87
|
2.9
|
24.6
|
1.0
|
N
|
A:ILE88
|
3.2
|
18.7
|
1.0
|
HZ
|
A:PHE3
|
3.4
|
23.8
|
1.0
|
HB1
|
A:ALA11
|
3.5
|
24.0
|
1.0
|
HG23
|
A:ILE88
|
3.5
|
23.3
|
1.0
|
CG1
|
A:ILE88
|
3.6
|
18.2
|
1.0
|
O
|
A:HOH304
|
3.6
|
31.1
|
1.0
|
O
|
A:HOH362
|
3.6
|
40.4
|
1.0
|
CA
|
A:ASP87
|
3.8
|
20.5
|
1.0
|
NE2
|
A:HIS15
|
3.8
|
28.5
|
1.0
|
HG13
|
A:ILE88
|
3.9
|
21.8
|
1.0
|
C
|
A:ASP87
|
4.0
|
19.1
|
1.0
|
HH21
|
A:ARG14
|
4.0
|
51.5
|
1.0
|
O
|
A:SER86
|
4.1
|
20.4
|
0.6
|
O
|
A:SER86
|
4.1
|
21.3
|
0.4
|
OD1
|
A:ASP87
|
4.1
|
26.9
|
1.0
|
CG
|
A:ASP87
|
4.1
|
29.2
|
1.0
|
CB
|
A:ILE88
|
4.2
|
18.1
|
1.0
|
CA
|
A:ILE88
|
4.2
|
16.5
|
1.0
|
HB2
|
A:ALA11
|
4.3
|
24.0
|
1.0
|
CG2
|
A:ILE88
|
4.3
|
19.4
|
1.0
|
CB
|
A:ALA11
|
4.3
|
20.0
|
1.0
|
CZ
|
A:PHE3
|
4.3
|
19.8
|
1.0
|
HD2
|
A:HIS15
|
4.4
|
32.5
|
1.0
|
CD2
|
A:HIS15
|
4.5
|
27.1
|
1.0
|
OD2
|
A:ASP87
|
4.5
|
37.2
|
1.0
|
H
|
A:THR89
|
4.5
|
21.6
|
1.0
|
HD13
|
A:ILE88
|
4.5
|
24.7
|
1.0
|
HE2
|
A:PHE3
|
4.5
|
22.9
|
1.0
|
CB
|
A:ASP87
|
4.5
|
25.1
|
1.0
|
CD1
|
A:ILE88
|
4.5
|
20.6
|
1.0
|
NH2
|
A:ARG14
|
4.6
|
42.9
|
1.0
|
HD11
|
A:ILE88
|
4.6
|
24.7
|
1.0
|
HH22
|
A:ARG14
|
4.6
|
51.5
|
1.0
|
HG21
|
A:ILE88
|
4.7
|
23.3
|
1.0
|
CE1
|
A:HIS15
|
4.8
|
26.2
|
1.0
|
HG1
|
A:THR89
|
4.8
|
29.4
|
1.0
|
HB3
|
A:ALA11
|
4.8
|
24.0
|
1.0
|
N
|
A:ASP87
|
4.8
|
19.9
|
1.0
|
HB2
|
A:ASP87
|
4.8
|
30.1
|
1.0
|
CE2
|
A:PHE3
|
4.9
|
19.1
|
1.0
|
C
|
A:SER86
|
4.9
|
19.8
|
0.6
|
C
|
A:SER86
|
4.9
|
20.2
|
0.4
|
HE1
|
A:HIS15
|
4.9
|
31.5
|
1.0
|
N
|
A:THR89
|
4.9
|
18.0
|
1.0
|
HA
|
A:ILE88
|
5.0
|
19.8
|
1.0
|
C
|
A:ILE88
|
5.0
|
16.5
|
1.0
|
HG22
|
A:ILE88
|
5.0
|
23.3
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 7ol7
Go back to
Chlorine Binding Sites List in 7ol7
Chlorine binding site 4 out
of 5 in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl204
b:22.6
occ:1.00
|
H
|
A:THR69
|
2.3
|
19.9
|
1.0
|
N
|
A:THR69
|
3.1
|
16.6
|
1.0
|
O
|
A:HOH373
|
3.2
|
16.4
|
1.0
|
O
|
A:HOH409
|
3.2
|
31.9
|
1.0
|
O
|
A:THR69
|
3.2
|
19.1
|
1.0
|
HA2
|
A:GLY67
|
3.3
|
21.2
|
1.0
|
O
|
A:HOH420
|
3.3
|
31.0
|
1.0
|
H
|
A:GLY67
|
3.3
|
19.8
|
1.0
|
O
|
A:HOH345
|
3.4
|
37.3
|
1.0
|
H
|
A:ARG68
|
3.5
|
18.8
|
1.0
|
N
|
A:ARG68
|
3.5
|
15.7
|
1.0
|
C
|
A:GLY67
|
3.5
|
17.7
|
1.0
|
C
|
A:THR69
|
3.6
|
16.8
|
1.0
|
HB
|
A:THR69
|
3.6
|
18.6
|
1.0
|
CA
|
A:GLY67
|
3.6
|
17.7
|
1.0
|
OD1
|
A:ASN65
|
3.7
|
19.8
|
1.0
|
OG
|
A:SER72
|
3.7
|
21.2
|
1.0
|
N
|
A:GLY67
|
3.7
|
16.5
|
1.0
|
CA
|
A:THR69
|
3.8
|
16.0
|
1.0
|
O
|
A:HOH391
|
4.0
|
20.5
|
1.0
|
O
|
A:GLY67
|
4.2
|
20.6
|
1.0
|
C
|
A:ARG68
|
4.2
|
18.2
|
1.0
|
CB
|
A:THR69
|
4.2
|
15.5
|
1.0
|
H
|
A:ASP66
|
4.2
|
16.8
|
1.0
|
OD1
|
A:ASP66
|
4.3
|
14.5
|
1.0
|
CA
|
A:ARG68
|
4.3
|
17.5
|
1.0
|
HA
|
A:PRO70
|
4.3
|
27.8
|
1.0
|
HG1
|
A:THR69
|
4.4
|
18.1
|
1.0
|
N
|
A:PRO70
|
4.4
|
19.1
|
1.0
|
HA
|
A:ARG68
|
4.5
|
21.0
|
1.0
|
HA3
|
A:GLY67
|
4.6
|
21.2
|
1.0
|
H
|
A:SER72
|
4.6
|
27.6
|
1.0
|
HA
|
A:THR69
|
4.7
|
19.2
|
1.0
|
NA
|
A:NA206
|
4.7
|
19.1
|
1.0
|
OG1
|
A:THR69
|
4.8
|
15.1
|
1.0
|
C
|
A:ASP66
|
4.8
|
14.6
|
1.0
|
CA
|
A:PRO70
|
4.9
|
23.2
|
1.0
|
HA
|
A:ASN65
|
4.9
|
17.9
|
1.0
|
N
|
A:ASP66
|
4.9
|
14.0
|
1.0
|
CG
|
A:ASN65
|
4.9
|
18.3
|
1.0
|
O
|
A:HOH354
|
4.9
|
24.6
|
0.5
|
CB
|
A:SER72
|
4.9
|
21.7
|
1.0
|
HB3
|
A:SER72
|
4.9
|
26.1
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 7ol7
Go back to
Chlorine Binding Sites List in 7ol7
Chlorine binding site 5 out
of 5 in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:35.9
occ:1.00
|
HE2
|
A:PHE38
|
2.8
|
19.4
|
1.0
|
HZ3
|
A:LYS33
|
2.8
|
33.2
|
1.0
|
HZ3
|
A:TRP123
|
3.1
|
27.3
|
1.0
|
HB2
|
A:ARG5
|
3.3
|
24.7
|
1.0
|
HD3
|
A:ARG5
|
3.3
|
26.8
|
1.0
|
O
|
A:HOH412
|
3.5
|
36.9
|
1.0
|
HD3
|
A:LYS33
|
3.5
|
24.0
|
1.0
|
CE2
|
A:PHE38
|
3.7
|
16.2
|
1.0
|
NZ
|
A:LYS33
|
3.7
|
27.7
|
1.0
|
HE2
|
A:LYS33
|
4.0
|
28.5
|
1.0
|
CZ3
|
A:TRP123
|
4.0
|
22.7
|
1.0
|
HZ1
|
A:LYS33
|
4.1
|
33.2
|
1.0
|
CB
|
A:ARG5
|
4.2
|
20.6
|
1.0
|
CE
|
A:LYS33
|
4.2
|
23.8
|
1.0
|
CD
|
A:ARG5
|
4.2
|
22.3
|
1.0
|
HZ
|
A:PHE38
|
4.2
|
19.6
|
1.0
|
HZ2
|
A:LYS33
|
4.2
|
33.2
|
1.0
|
CD
|
A:LYS33
|
4.3
|
20.0
|
1.0
|
HE
|
A:ARG5
|
4.4
|
28.1
|
1.0
|
CZ
|
A:PHE38
|
4.4
|
16.4
|
1.0
|
HB3
|
A:ARG5
|
4.5
|
24.7
|
1.0
|
HD2
|
A:PHE38
|
4.6
|
18.4
|
1.0
|
CD2
|
A:PHE38
|
4.6
|
15.3
|
1.0
|
HG3
|
A:ARG5
|
4.6
|
25.1
|
1.0
|
HE3
|
A:TRP123
|
4.6
|
22.6
|
1.0
|
CG
|
A:ARG5
|
4.6
|
20.9
|
1.0
|
NE
|
A:ARG5
|
4.8
|
23.4
|
1.0
|
HH2
|
A:TRP123
|
4.8
|
27.8
|
1.0
|
CE3
|
A:TRP123
|
4.8
|
18.9
|
1.0
|
HD2
|
A:LYS33
|
4.8
|
24.0
|
1.0
|
HD2
|
A:ARG5
|
4.9
|
26.8
|
1.0
|
CH2
|
A:TRP123
|
4.9
|
23.1
|
1.0
|
H
|
A:ARG5
|
4.9
|
23.8
|
1.0
|
|
Reference:
A.Camara-Artigas,
M.C.Salinas-Garcia,
M.Plaza-Garrido.
Crystal Structure of Lysozyme in Complex with Tfe To Be Published.
Page generated: Tue Jul 30 01:44:12 2024
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