Chlorine in PDB 7olb: Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi

Enzymatic activity of Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi

All present enzymatic activity of Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi:
4.2.99.18;

Protein crystallography data

The structure of Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi, PDB code: 7olb was solved by F.Coste, S.Goffinont, D.Flament, B.Castaing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.17 / 1.10
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.57, 35.92, 46.49, 95.5, 91.89, 108.41
R / Rfree (%) 14.4 / 15.7

Other elements in 7olb:

The structure of Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi (pdb code 7olb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi, PDB code: 7olb:

Chlorine binding site 1 out of 1 in 7olb

Go back to Chlorine Binding Sites List in 7olb
Chlorine binding site 1 out of 1 in the Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl409

b:21.3
occ:1.00
 HE A:ARG133 2.4 14.1 0.5
HH21 A:ARG133 2.8 14.0 0.5
HG3 A:LYS139 3.1 21.5 1.0
O A:HOH635 3.1 21.2 1.0
HE3 A:LYS139 3.1 24.9 1.0
O A:HOH573 3.2 18.2 1.0
NE A:ARG133 3.2 11.8 0.5
HG3 A:ARG133 3.4 15.2 0.5
HG2 A:ARG133 3.5 16.1 0.5
NH2 A:ARG133 3.5 11.7 0.5
HG3 A:ARG133 3.7 16.1 0.5
CZ A:ARG133 3.8 11.6 0.5
CG A:LYS139 4.0 17.9 1.0
HD2 A:LYS139 4.0 22.4 1.0
HB3 A:ALA132 4.0 14.4 1.0
CE A:LYS139 4.0 20.8 1.0
CG A:ARG133 4.1 13.4 0.5
CG A:ARG133 4.1 12.6 0.5
HD3 A:ARG133 4.1 16.6 0.5
HG2 A:ARG133 4.1 15.2 0.5
CD A:LYS139 4.2 18.7 1.0
CD A:ARG133 4.3 12.4 0.5
HH22 A:ARG133 4.3 14.0 0.5
H A:LYS139 4.4 19.6 1.0
HA2 A:GLY129 4.4 14.8 1.0
HH11 A:ARG133 4.4 17.8 0.5
HB1 A:ALA132 4.4 14.4 1.0
HE2 A:LYS139 4.5 24.9 1.0
HG2 A:LYS139 4.5 21.5 1.0
CD A:ARG133 4.6 13.8 0.5
CB A:ALA132 4.7 12.0 1.0
HB2 A:LYS139 4.7 21.6 1.0
HZ2 A:LYS139 4.8 25.5 1.0
HD3 A:ARG133 4.8 14.9 0.5
HD2 A:ARG133 4.8 14.9 0.5
CB A:LYS139 4.9 18.0 1.0
NZ A:LYS139 5.0 21.3 1.0

Reference:

F.Coste, S.Goffinont, D.Flament, B.Castaing. Crystal Structure of Pab-Agog, An 8-Oxoguanine Dna Glycosylase From Pyrococcus Abyssi To Be Published.
Page generated: Tue Apr 4 21:02:41 2023

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