Chlorine in PDB 7omg: Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template

Enzymatic activity of Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template

All present enzymatic activity of Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template, PDB code: 7omg was solved by K.Betz, H.M.Kropp, K.Diederichs, A.Marx, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.25 / 2.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 108.403, 147.138, 71.129, 90, 90, 90
R / Rfree (%) 21 / 24.8

Other elements in 7omg:

The structure of Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Manganese (Mn) 1 atom
Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template (pdb code 7omg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template, PDB code: 7omg:

Chlorine binding site 1 out of 1 in 7omg

Go back to Chlorine Binding Sites List in 7omg
Chlorine binding site 1 out of 1 in the Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Kod Dna Polymerase in A Ternary Complex with An Uracil Containing Template within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Cl101

b:82.8
occ:1.00
 O2 T:DC5 2.9 86.7 1.0
N7 T:DA6 3.1 88.5 1.0
NZ A:LYS371 3.2 61.9 1.0
C2' T:DC5 3.4 73.1 1.0
C2 T:DC5 3.6 86.7 1.0
C8 T:DA6 3.9 88.7 1.0
C5 T:DA6 4.1 90.9 1.0
N1 T:DC5 4.2 91.0 1.0
N3 T:DC5 4.3 85.3 1.0
C3' T:DC5 4.3 72.3 1.0
N6 T:DA6 4.3 94.8 1.0
C1' T:DC5 4.3 82.2 1.0
CD A:LYS371 4.4 56.2 1.0
CE A:LYS371 4.4 56.1 1.0
C5' T:DC5 4.5 62.8 1.0
OD2 A:ASP113 4.6 51.7 1.0
C6 T:DA6 4.6 93.5 1.0
C4' T:DC5 4.8 71.3 1.0
O4' T:DC5 4.8 77.7 1.0

Reference:

H.M.Kropp, S.Ludmann, K.Diederichs, K.Betz, A.Marx. Structural Basis For the Recognition of Deaminated Nucleobases By An Archaeal Dna Polymerase. Chembiochem 2021.
ISSN: ESSN 1439-7633
PubMed: 34486208
DOI: 10.1002/CBIC.202100306
Page generated: Tue Jul 30 01:57:21 2024

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